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Cluster: HRGMv2_1900_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1900_8 HRGMv2_1900_8_35 37333 38739 + GH1
TC HRGMv2_1900_8 HRGMv2_1900_8_36 38751 40034 + 4.A.3.2.2
peptidase HRGMv2_1900_8 HRGMv2_1900_8_37 40065 41180 + M20.UPW
pfam HRGMv2_1900_8 HRGMv2_1900_8_38 41182 42078 + Mem_trans | Mem_trans
TC HRGMv2_1900_8 HRGMv2_1900_8_39 42066 42926 + 2.A.115.1.1
pfam HRGMv2_1900_8 HRGMv2_1900_8_40 43082 43672 + Rubrerythrin | RUBY_RBDX
TC HRGMv2_1900_8 HRGMv2_1900_8_41 43763 44461 + 9.B.120.1.1
Gene ID: HRGMv2_1900_8_35
Type: CAZyme
Location: 37333 - 38739 (+)
Gene ID: HRGMv2_1900_8_36
Type: TC
Location: 38751 - 40034 (+)
Gene ID: HRGMv2_1900_8_37
Type: peptidase
Location: 40065 - 41180 (+)
Gene ID: HRGMv2_1900_8_38
Type: pfam
Location: 41182 - 42078 (+)
Gene ID: HRGMv2_1900_8_39
Type: TC
Location: 42066 - 42926 (+)
Gene ID: HRGMv2_1900_8_40
Type: pfam
Location: 43082 - 43672 (+)
Gene ID: HRGMv2_1900_8_41
Type: TC
Location: 43763 - 44461 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1900_8_41 vegan > omnivore 2.33122 0.00186

🧭 Explore Read Mapping of CGC

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