Cluster: HRGMv2_1895_CGC9
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1895
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1895_15 | HRGMv2_1895_15_18 | 30174 | 32141 | - | GT4 |
| TC | HRGMv2_1895_15 | HRGMv2_1895_15_19 | 32145 | 33185 | - | 4.D.2.1.5 |
| CAZyme | HRGMv2_1895_15 | HRGMv2_1895_15_20 | 33196 | 34293 | - | GT4 |
Gene ID: HRGMv2_1895_15_18
Type: CAZyme
Location: 30174 - 32141 (-)
Type: CAZyme
Location: 30174 - 32141 (-)
Gene ID: HRGMv2_1895_15_19
Type: TC
Location: 32145 - 33185 (-)
Type: TC
Location: 32145 - 33185 (-)
Gene ID: HRGMv2_1895_15_20
Type: CAZyme
Location: 33196 - 34293 (-)
Type: CAZyme
Location: 33196 - 34293 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp900547815
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1895_15_19 | vegan > omnivore | 18.51364 | 0.01332 |
| HRGMv2_1895_15_19 | vegetarian > omnivore | 19.36853 | 0.01188 |