Cluster: HRGMv2_1895_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1895
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1895_15 | HRGMv2_1895_15_9 | 8186 | 8935 | - | 2.A.79.1.4 |
| TC | HRGMv2_1895_15 | HRGMv2_1895_15_10 | 8983 | 10596 | - | 2.A.58.2.2 |
| peptidase | HRGMv2_1895_15 | HRGMv2_1895_15_11 | 10736 | 11824 | + | M20.UPD |
| CAZyme | HRGMv2_1895_15 | HRGMv2_1895_15_12 | 11981 | 17152 | - | CBM32 |
Gene ID: HRGMv2_1895_15_9
Type: TC
Location: 8186 - 8935 (-)
Type: TC
Location: 8186 - 8935 (-)
Gene ID: HRGMv2_1895_15_10
Type: TC
Location: 8983 - 10596 (-)
Type: TC
Location: 8983 - 10596 (-)
Gene ID: HRGMv2_1895_15_11
Type: peptidase
Location: 10736 - 11824 (+)
Type: peptidase
Location: 10736 - 11824 (+)
Gene ID: HRGMv2_1895_15_12
Type: CAZyme
Location: 11981 - 17152 (-)
Type: CAZyme
Location: 11981 - 17152 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp900547815
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1895_15_9 | vegan > omnivore | 2.07010 | 0.01332 |
| HRGMv2_1895_15_9 | vegetarian > omnivore | 2.24555 | 0.01188 |
| HRGMv2_1895_15_11 | vegetarian > omnivore | 1.47494 | 0.01188 |
| HRGMv2_1895_15_11 | vegetarian > vegan | 1.85824 | 0.04656 |