Cluster: HRGMv2_1895_CGC7

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_1895_14	HRGMv2_1895_14_15	13735	14376	-	3.A.1.122.8
NULL(UNKNOWN)	HRGMv2_1895_14	HRGMv2_1895_14_16	14459	15613	-	NULL(UNKNOWN) [View Structural Homologs]
TF	HRGMv2_1895_14	HRGMv2_1895_14_17	15610	16284	-	LytTR
TC	HRGMv2_1895_14	HRGMv2_1895_14_18	16567	18186	-	3.A.1.123.1
TF	HRGMv2_1895_14	HRGMv2_1895_14_19	18319	19416	-	HTH_3
CAZyme	HRGMv2_1895_14	HRGMv2_1895_14_20	19980	21383	-	GT2

Gene ID: HRGMv2_1895_14_15
Type: TC
Location: 13735 - 14376 (-)

Gene ID: HRGMv2_1895_14_16
Type:
Location: 14459 - 15613 (-)

Gene ID: HRGMv2_1895_14_17
Type: TF
Location: 15610 - 16284 (-)

Gene ID: HRGMv2_1895_14_18
Type: TC
Location: 16567 - 18186 (-)

Gene ID: HRGMv2_1895_14_19
Type: TF
Location: 18319 - 19416 (-)

Gene ID: HRGMv2_1895_14_20
Type: CAZyme
Location: 19980 - 21383 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1895_14_18	vegan > omnivore	2.09357	0.01332
HRGMv2_1895_14_18	vegetarian > omnivore	2.54611	0.01188
HRGMv2_1895_14_19	vegan > omnivore	17.62200	0.01332
HRGMv2_1895_14_19	vegetarian > omnivore	19.60599	0.01188
HRGMv2_1895_14_19	vegetarian > vegan	1.98400	0.04656
HRGMv2_1895_14_20	vegetarian > vegan	1.95661	0.04656