Cluster: HRGMv2_1895_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1895
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1895_5 | HRGMv2_1895_5_47 | 50558 | 51388 | + | 3.A.1.104.1 |
| TC | HRGMv2_1895_5 | HRGMv2_1895_5_48 | 51399 | 52217 | + | 3.A.1.104.2 |
| pfam | HRGMv2_1895_5 | HRGMv2_1895_5_49 | 52297 | 52683 | + | CTP_transf_like |
| CAZyme | HRGMv2_1895_5 | HRGMv2_1895_5_50 | 52685 | 53962 | + | GT2 |
Gene ID: HRGMv2_1895_5_47
Type: TC
Location: 50558 - 51388 (+)
Type: TC
Location: 50558 - 51388 (+)
Gene ID: HRGMv2_1895_5_48
Type: TC
Location: 51399 - 52217 (+)
Type: TC
Location: 51399 - 52217 (+)
Gene ID: HRGMv2_1895_5_49
Type: pfam
Location: 52297 - 52683 (+)
Type: pfam
Location: 52297 - 52683 (+)
Gene ID: HRGMv2_1895_5_50
Type: CAZyme
Location: 52685 - 53962 (+)
Type: CAZyme
Location: 52685 - 53962 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp900547815
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1895_5_47 | vegan > omnivore | 3.22707 | 0.01332 |
| HRGMv2_1895_5_47 | vegetarian > omnivore | 3.07100 | 0.01188 |
| HRGMv2_1895_5_48 | vegetarian > omnivore | 1.83284 | 0.01188 |
| HRGMv2_1895_5_48 | vegetarian > vegan | 1.10074 | 0.04656 |
| HRGMv2_1895_5_49 | vegan > omnivore | 5.77456 | 0.01332 |
| HRGMv2_1895_5_49 | vegetarian > omnivore | 2.36699 | 0.01188 |
| HRGMv2_1895_5_50 | vegan > omnivore | 19.23966 | 0.01332 |
| HRGMv2_1895_5_50 | vegetarian > omnivore | 18.74428 | 0.01188 |