Cluster: HRGMv2_1895_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1895
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1895_2 | HRGMv2_1895_2_34 | 33010 | 34236 | + | 4.A.1.2.6 |
| TF | HRGMv2_1895_2 | HRGMv2_1895_2_35 | 34346 | 35221 | + | HTH_6 |
| CAZyme | HRGMv2_1895_2 | HRGMv2_1895_2_36 | 35208 | 36644 | + | GH1 |
| TC | HRGMv2_1895_2 | HRGMv2_1895_2_37 | 36647 | 37144 | + | 4.A.1.1.13 |
| pfam | HRGMv2_1895_2 | HRGMv2_1895_2_38 | 37182 | 37466 | - | Bac_DNA_binding | HU-HIG |
| STP | HRGMv2_1895_2 | HRGMv2_1895_2_39 | 37493 | 38035 | - | NUDIX |
| TC | HRGMv2_1895_2 | HRGMv2_1895_2_40 | 38104 | 38739 | - | 2.A.87.2.3 |
Gene ID: HRGMv2_1895_2_34
Type: TC
Location: 33010 - 34236 (+)
Type: TC
Location: 33010 - 34236 (+)
Gene ID: HRGMv2_1895_2_35
Type: TF
Location: 34346 - 35221 (+)
Type: TF
Location: 34346 - 35221 (+)
Gene ID: HRGMv2_1895_2_36
Type: CAZyme
Location: 35208 - 36644 (+)
Type: CAZyme
Location: 35208 - 36644 (+)
Gene ID: HRGMv2_1895_2_37
Type: TC
Location: 36647 - 37144 (+)
Type: TC
Location: 36647 - 37144 (+)
Gene ID: HRGMv2_1895_2_38
Type: pfam
Location: 37182 - 37466 (-)
Type: pfam
Location: 37182 - 37466 (-)
Gene ID: HRGMv2_1895_2_39
Type: STP
Location: 37493 - 38035 (-)
Type: STP
Location: 37493 - 38035 (-)
Gene ID: HRGMv2_1895_2_40
Type: TC
Location: 38104 - 38739 (-)
Type: TC
Location: 38104 - 38739 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp900547815
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1895_2_38 | vegan > omnivore | 1.56239 | 0.01332 |
| HRGMv2_1895_2_38 | vegetarian > omnivore | 1.56536 | 0.01188 |
| HRGMv2_1895_2_39 | vegan > omnivore | 2.25612 | 0.01332 |
| HRGMv2_1895_2_39 | vegetarian > omnivore | 3.53664 | 0.01188 |
| HRGMv2_1895_2_39 | vegetarian > vegan | 1.28051 | 0.04656 |
| HRGMv2_1895_2_40 | vegetarian > omnivore | 1.12122 | 0.01188 |
| HRGMv2_1895_2_40 | vegetarian > vegan | 1.45624 | 0.04656 |