Cluster: HRGMv2_1895_CGC2
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1895
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1895_2 | HRGMv2_1895_2_12 | 10140 | 11021 | + | 3.A.1.1.25 |
| TC | HRGMv2_1895_2 | HRGMv2_1895_2_13 | 11033 | 11893 | + | 3.A.1.1.18 |
| pfam | HRGMv2_1895_2 | HRGMv2_1895_2_14 | 11906 | 12079 | + | DUF6903 |
| TC | HRGMv2_1895_2 | HRGMv2_1895_2_15 | 12091 | 13182 | + | 3.A.1.1.26 |
| CAZyme | HRGMv2_1895_2 | HRGMv2_1895_2_16 | 13200 | 15344 | + | GH112 |
| NULL(UNKNOWN) | HRGMv2_1895_2 | HRGMv2_1895_2_17 | 15448 | 15798 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1895_2 | HRGMv2_1895_2_18 | 15870 | 16061 | - | Ribosomal_L28 |
| TC | HRGMv2_1895_2 | HRGMv2_1895_2_19 | 16207 | 17187 | + | 9.B.146.1.6 |
Gene ID: HRGMv2_1895_2_12
Type: TC
Location: 10140 - 11021 (+)
Type: TC
Location: 10140 - 11021 (+)
Gene ID: HRGMv2_1895_2_13
Type: TC
Location: 11033 - 11893 (+)
Type: TC
Location: 11033 - 11893 (+)
Gene ID: HRGMv2_1895_2_14
Type: pfam
Location: 11906 - 12079 (+)
Type: pfam
Location: 11906 - 12079 (+)
Gene ID: HRGMv2_1895_2_15
Type: TC
Location: 12091 - 13182 (+)
Type: TC
Location: 12091 - 13182 (+)
Gene ID: HRGMv2_1895_2_16
Type: CAZyme
Location: 13200 - 15344 (+)
Type: CAZyme
Location: 13200 - 15344 (+)
Gene ID: HRGMv2_1895_2_17
Type:
Location: 15448 - 15798 (+)
Type:
Location: 15448 - 15798 (+)
Gene ID: HRGMv2_1895_2_18
Type: pfam
Location: 15870 - 16061 (-)
Type: pfam
Location: 15870 - 16061 (-)
Gene ID: HRGMv2_1895_2_19
Type: TC
Location: 16207 - 17187 (+)
Type: TC
Location: 16207 - 17187 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp900547815
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1895_2_12 | vegan > omnivore | 2.58704 | 0.01332 |
| HRGMv2_1895_2_12 | vegetarian > omnivore | 2.84395 | 0.01188 |
| HRGMv2_1895_2_13 | vegan > omnivore | 1.28315 | 0.01332 |
| HRGMv2_1895_2_13 | vegetarian > omnivore | 1.53784 | 0.01188 |
| HRGMv2_1895_2_14 | vegetarian > omnivore | 2.16639 | 0.01188 |
| HRGMv2_1895_2_14 | vegetarian > vegan | 2.12085 | 0.04656 |
| HRGMv2_1895_2_15 | vegetarian > omnivore | 1.17068 | 0.01188 |
| HRGMv2_1895_2_18 | vegan > omnivore | 20.41765 | 0.01332 |
| HRGMv2_1895_2_18 | vegetarian > omnivore | 19.59059 | 0.01188 |