Cluster: HRGMv2_1895_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1895
- CGC Family ID: CGCFAM_02226
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1895_31 | HRGMv2_1895_31_2 | 674 | 1504 | - | 4.A.6.1.16 |
| pfam | HRGMv2_1895_31 | HRGMv2_1895_31_3 | 1507 | 2346 | - | EII-Sor |
| pfam | HRGMv2_1895_31 | HRGMv2_1895_31_4 | 2403 | 2894 | - | PTSIIB_sorb |
| TC | HRGMv2_1895_31 | HRGMv2_1895_31_5 | 2950 | 3378 | - | 4.A.6.1.7 |
| NULL(UNKNOWN) | HRGMv2_1895_31 | HRGMv2_1895_31_6 | 3634 | 4401 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_1895_31 | HRGMv2_1895_31_7 | 4446 | 4889 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1895_31 | HRGMv2_1895_31_8 | 4947 | 11837 | - | CBM32 | GH31_18 |
Gene ID: HRGMv2_1895_31_2
Type: TC
Location: 674 - 1504 (-)
Type: TC
Location: 674 - 1504 (-)
Gene ID: HRGMv2_1895_31_3
Type: pfam
Location: 1507 - 2346 (-)
Type: pfam
Location: 1507 - 2346 (-)
Gene ID: HRGMv2_1895_31_4
Type: pfam
Location: 2403 - 2894 (-)
Type: pfam
Location: 2403 - 2894 (-)
Gene ID: HRGMv2_1895_31_5
Type: TC
Location: 2950 - 3378 (-)
Type: TC
Location: 2950 - 3378 (-)
Gene ID: HRGMv2_1895_31_6
Type:
Location: 3634 - 4401 (-)
Type:
Location: 3634 - 4401 (-)
Gene ID: HRGMv2_1895_31_7
Type:
Location: 4446 - 4889 (-)
Type:
Location: 4446 - 4889 (-)
Gene ID: HRGMv2_1895_31_8
Type: CAZyme
Location: 4947 - 11837 (-)
Type: CAZyme
Location: 4947 - 11837 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp900547815
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1895_31_2 | vegan > omnivore | 3.44142 | 0.01332 |
| HRGMv2_1895_31_2 | vegetarian > omnivore | 1.79169 | 0.01188 |
| HRGMv2_1895_31_3 | vegan > omnivore | 4.44030 | 0.01332 |
| HRGMv2_1895_31_3 | vegetarian > omnivore | 5.94279 | 0.01188 |
| HRGMv2_1895_31_3 | vegetarian > vegan | 1.50249 | 0.04656 |
| HRGMv2_1895_31_4 | vegetarian > omnivore | 1.27271 | 0.01188 |
| HRGMv2_1895_31_5 | vegan > omnivore | 19.76074 | 0.01332 |
| HRGMv2_1895_31_5 | vegetarian > omnivore | 19.51595 | 0.01188 |