Cluster: HRGMv2_1895_CGC12

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_1895_25	HRGMv2_1895_25_9	6023	7267	-	3.A.1.122.2
pfam	HRGMv2_1895_25	HRGMv2_1895_25_10	7264	9018	-	Biotin_lipoyl_2
TC	HRGMv2_1895_25	HRGMv2_1895_25_11	9015	9713	-	3.A.1.122.2
pfam	HRGMv2_1895_25	HRGMv2_1895_25_12	9691	10854	-	HlyD_3 \| Biotin_lipoyl_2
TC	HRGMv2_1895_25	HRGMv2_1895_25_13	10978	12624	+	2.A.53.3.11
TF	HRGMv2_1895_25	HRGMv2_1895_25_14	12648	13865	-	HTH_3
TC	HRGMv2_1895_25	HRGMv2_1895_25_15	14001	14870	+	2.A.115.1.5
pfam	HRGMv2_1895_25	HRGMv2_1895_25_16	15104	17341	+	Gly_radical \| PFL-like
pfam	HRGMv2_1895_25	HRGMv2_1895_25_17	17370	18095	+	Radical_SAM \| Fer4_12
CAZyme	HRGMv2_1895_25	HRGMv2_1895_25_18	18143	20596	-	GT51

Gene ID: HRGMv2_1895_25_9
Type: TC
Location: 6023 - 7267 (-)

Gene ID: HRGMv2_1895_25_10
Type: pfam
Location: 7264 - 9018 (-)

Gene ID: HRGMv2_1895_25_11
Type: TC
Location: 9015 - 9713 (-)

Gene ID: HRGMv2_1895_25_12
Type: pfam
Location: 9691 - 10854 (-)

Gene ID: HRGMv2_1895_25_13
Type: TC
Location: 10978 - 12624 (+)

Gene ID: HRGMv2_1895_25_14
Type: TF
Location: 12648 - 13865 (-)

Gene ID: HRGMv2_1895_25_15
Type: TC
Location: 14001 - 14870 (+)

Gene ID: HRGMv2_1895_25_16
Type: pfam
Location: 15104 - 17341 (+)

Gene ID: HRGMv2_1895_25_17
Type: pfam
Location: 17370 - 18095 (+)

Gene ID: HRGMv2_1895_25_18
Type: CAZyme
Location: 18143 - 20596 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1895_25_9	vegan > omnivore	4.63255	0.01332
HRGMv2_1895_25_9	vegetarian > omnivore	4.58831	0.01188
HRGMv2_1895_25_10	vegan > omnivore	2.95944	0.01332
HRGMv2_1895_25_10	vegetarian > omnivore	3.85591	0.01188
HRGMv2_1895_25_11	vegetarian > vegan	1.70831	0.04656
HRGMv2_1895_25_12	vegetarian > vegan	1.16076	0.04656