Cluster: HRGMv2_1895_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1895
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1895_1 | HRGMv2_1895_1_13 | 12256 | 12549 | - | 4.A.3.2.6 |
| CAZyme | HRGMv2_1895_1 | HRGMv2_1895_1_14 | 12565 | 13893 | - | GH4 |
| TF | HRGMv2_1895_1 | HRGMv2_1895_1_15 | 13965 | 15866 | - | HTH_11 |
| TC | HRGMv2_1895_1 | HRGMv2_1895_1_16 | 15877 | 17139 | - | 4.A.3.2.6 |
Gene ID: HRGMv2_1895_1_13
Type: TC
Location: 12256 - 12549 (-)
Type: TC
Location: 12256 - 12549 (-)
Gene ID: HRGMv2_1895_1_14
Type: CAZyme
Location: 12565 - 13893 (-)
Type: CAZyme
Location: 12565 - 13893 (-)
Gene ID: HRGMv2_1895_1_15
Type: TF
Location: 13965 - 15866 (-)
Type: TF
Location: 13965 - 15866 (-)
Gene ID: HRGMv2_1895_1_16
Type: TC
Location: 15877 - 17139 (-)
Type: TC
Location: 15877 - 17139 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp900547815
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1895_1_13 | vegetarian > omnivore | 2.67179 | 0.01188 |
| HRGMv2_1895_1_13 | vegetarian > vegan | 1.86206 | 0.04656 |
| HRGMv2_1895_1_14 | vegan > omnivore | 2.34201 | 0.01332 |
| HRGMv2_1895_1_15 | vegan > omnivore | 3.65143 | 0.01332 |
| HRGMv2_1895_1_15 | vegetarian > omnivore | 3.91847 | 0.01188 |