Cluster: HRGMv2_1881_CGC68
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1881
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1881_27 | HRGMv2_1881_27_40 | 39198 | 40673 | - | 2.A.1.6.4 |
| NULL(UNKNOWN) | HRGMv2_1881_27 | HRGMv2_1881_27_41 | 40922 | 41692 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_1881_27 | HRGMv2_1881_27_42 | 41694 | 41891 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1881_27 | HRGMv2_1881_27_43 | 42206 | 43720 | + | 1.B.3.1.3 |
| CAZyme | HRGMv2_1881_27 | HRGMv2_1881_27_44 | 43785 | 45140 | - | GH4 |
Gene ID: HRGMv2_1881_27_40
Type: TC
Location: 39198 - 40673 (-)
Type: TC
Location: 39198 - 40673 (-)
Gene ID: HRGMv2_1881_27_41
Type:
Location: 40922 - 41692 (-)
Type:
Location: 40922 - 41692 (-)
Gene ID: HRGMv2_1881_27_42
Type:
Location: 41694 - 41891 (-)
Type:
Location: 41694 - 41891 (-)
Gene ID: HRGMv2_1881_27_43
Type: TC
Location: 42206 - 43720 (+)
Type: TC
Location: 42206 - 43720 (+)
Gene ID: HRGMv2_1881_27_44
Type: CAZyme
Location: 43785 - 45140 (-)
Type: CAZyme
Location: 43785 - 45140 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kosakonia
Species
Kosakonia cowanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.