Cluster: HRGMv2_1881_CGC67
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1881
- CGC Family ID: CGCFAM_00474
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1881_27 | HRGMv2_1881_27_22 | 17515 | 18654 | + | CBM50 |
| STP | HRGMv2_1881_27 | HRGMv2_1881_27_23 | 18781 | 19773 | + | Sigma70_r2 | Sigma70_r3 | Sigma70_r4 |
| pfam | HRGMv2_1881_27 | HRGMv2_1881_27_24 | 19829 | 20209 | - | SnoaL_3 | DUF4440 |
| TC | HRGMv2_1881_27 | HRGMv2_1881_27_25 | 20206 | 21414 | - | 2.A.1.3.51 |
Gene ID: HRGMv2_1881_27_22
Type: CAZyme
Location: 17515 - 18654 (+)
Type: CAZyme
Location: 17515 - 18654 (+)
Gene ID: HRGMv2_1881_27_23
Type: STP
Location: 18781 - 19773 (+)
Type: STP
Location: 18781 - 19773 (+)
Gene ID: HRGMv2_1881_27_24
Type: pfam
Location: 19829 - 20209 (-)
Type: pfam
Location: 19829 - 20209 (-)
Gene ID: HRGMv2_1881_27_25
Type: TC
Location: 20206 - 21414 (-)
Type: TC
Location: 20206 - 21414 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kosakonia
Species
Kosakonia cowanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.