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Cluster: HRGMv2_1881_CGC61

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1881_22 HRGMv2_1881_22_39 37214 38548 + 9.B.34.1.3
STP HRGMv2_1881_22 HRGMv2_1881_22_40 38559 39701 - Aminotran_1_2
STP HRGMv2_1881_22 HRGMv2_1881_22_41 39712 41082 - CBS | CBS | PALP
TC HRGMv2_1881_22 HRGMv2_1881_22_42 41478 42500 + 3.A.1.24.2
TC HRGMv2_1881_22 HRGMv2_1881_22_43 42493 43161 + 3.A.1.24.2
TC HRGMv2_1881_22 HRGMv2_1881_22_44 43180 43992 + 3.A.1.24.2
NULL(UNKNOWN) HRGMv2_1881_22 HRGMv2_1881_22_45 43973 44086 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1881_22 HRGMv2_1881_22_46 44149 45330 + Thiolase_N | ketoacyl-synt | Thiolase_C
TC HRGMv2_1881_22 HRGMv2_1881_22_47 45772 46452 + 1.B.35.1.5
CAZyme HRGMv2_1881_22 HRGMv2_1881_22_48 46739 47914 - PL22 | PL22
pfam HRGMv2_1881_22 HRGMv2_1881_22_49 48412 49248 + KduI
pfam HRGMv2_1881_22 HRGMv2_1881_22_50 49308 50069 + adh_short | adh_short_C2
TC HRGMv2_1881_22 HRGMv2_1881_22_51 50383 51801 + 2.A.1.1.2
TC HRGMv2_1881_22 HRGMv2_1881_22_52 52043 53332 - 3.A.1.1.11
TC HRGMv2_1881_22 HRGMv2_1881_22_53 53395 54522 - 3.A.1.1.11
TC HRGMv2_1881_22 HRGMv2_1881_22_54 54535 55437 - 3.A.1.1.11
TC HRGMv2_1881_22 HRGMv2_1881_22_55 55430 56320 - 3.A.1.1.11
Gene ID: HRGMv2_1881_22_39
Type: TC
Location: 37214 - 38548 (+)
Gene ID: HRGMv2_1881_22_40
Type: STP
Location: 38559 - 39701 (-)
Gene ID: HRGMv2_1881_22_41
Type: STP
Location: 39712 - 41082 (-)
Gene ID: HRGMv2_1881_22_42
Type: TC
Location: 41478 - 42500 (+)
Gene ID: HRGMv2_1881_22_43
Type: TC
Location: 42493 - 43161 (+)
Gene ID: HRGMv2_1881_22_44
Type: TC
Location: 43180 - 43992 (+)
Gene ID: HRGMv2_1881_22_45
Type:
Location: 43973 - 44086 (-)
Gene ID: HRGMv2_1881_22_46
Type: pfam
Location: 44149 - 45330 (+)
Gene ID: HRGMv2_1881_22_47
Type: TC
Location: 45772 - 46452 (+)
Gene ID: HRGMv2_1881_22_48
Type: CAZyme
Location: 46739 - 47914 (-)
Gene ID: HRGMv2_1881_22_49
Type: pfam
Location: 48412 - 49248 (+)
Gene ID: HRGMv2_1881_22_50
Type: pfam
Location: 49308 - 50069 (+)
Gene ID: HRGMv2_1881_22_51
Type: TC
Location: 50383 - 51801 (+)
Gene ID: HRGMv2_1881_22_52
Type: TC
Location: 52043 - 53332 (-)
Gene ID: HRGMv2_1881_22_53
Type: TC
Location: 53395 - 54522 (-)
Gene ID: HRGMv2_1881_22_54
Type: TC
Location: 54535 - 55437 (-)
Gene ID: HRGMv2_1881_22_55
Type: TC
Location: 55430 - 56320 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1881_22_44 vegetarian > omnivore 1.54861 0.03699
HRGMv2_1881_22_52 vegetarian > omnivore 1.60103 0.03699
HRGMv2_1881_22_55 vegetarian > omnivore 1.11869 0.03699
HRGMv2_1881_22_55 vegetarian > vegan 1.49042 0.02017

🧭 Explore Read Mapping of CGC

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