Cluster: HRGMv2_1881_CGC49
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1881
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1881_12 | HRGMv2_1881_12_52 | 61216 | 61947 | + | GT51 |
| TC | HRGMv2_1881_12 | HRGMv2_1881_12_53 | 61948 | 62220 | - | 8.A.8.1.5 |
| pfam | HRGMv2_1881_12 | HRGMv2_1881_12_54 | 62217 | 63071 | - | RapZ-like_N | PapZ_C |
| TC | HRGMv2_1881_12 | HRGMv2_1881_12_55 | 63117 | 63608 | - | 4.A.2.1.7 |
| pfam | HRGMv2_1881_12 | HRGMv2_1881_12_56 | 63689 | 63976 | - | Ribosomal_S30AE |
| pfam | HRGMv2_1881_12 | HRGMv2_1881_12_57 | 63999 | 65432 | - | Sigma54_AID | Sigma54_DBD | Sigma54_CBD |
| TC | HRGMv2_1881_12 | HRGMv2_1881_12_58 | 65481 | 66155 | - | 1.B.42.1.2 |
| TC | HRGMv2_1881_12 | HRGMv2_1881_12_59 | 66213 | 66773 | - | 1.B.42.1.2 |
| TC | HRGMv2_1881_12 | HRGMv2_1881_12_60 | 66742 | 67317 | - | 1.B.42.1.2 |
| pfam | HRGMv2_1881_12 | HRGMv2_1881_12_61 | 67314 | 67880 | - | Hydrolase_3 |
| STP | HRGMv2_1881_12 | HRGMv2_1881_12_62 | 67895 | 68881 | - | CBS | CBS | SIS |
| TC | HRGMv2_1881_12 | HRGMv2_1881_12_63 | 68895 | 69869 | - | 2.A.19.5.1 |
| TC | HRGMv2_1881_12 | HRGMv2_1881_12_64 | 70100 | 70912 | + | 3.A.1.27.3 |
| TC | HRGMv2_1881_12 | HRGMv2_1881_12_65 | 70920 | 71702 | + | 3.A.1.27.3 |
| TC | HRGMv2_1881_12 | HRGMv2_1881_12_66 | 71707 | 72258 | + | 3.A.1.27.3 |
| TC | HRGMv2_1881_12 | HRGMv2_1881_12_67 | 72276 | 72914 | + | 3.A.1.27.3 |
| TC | HRGMv2_1881_12 | HRGMv2_1881_12_68 | 72911 | 73204 | + | 3.A.1.27.3 |
Gene ID: HRGMv2_1881_12_52
Type: CAZyme
Location: 61216 - 61947 (+)
Type: CAZyme
Location: 61216 - 61947 (+)
Gene ID: HRGMv2_1881_12_53
Type: TC
Location: 61948 - 62220 (-)
Type: TC
Location: 61948 - 62220 (-)
Gene ID: HRGMv2_1881_12_54
Type: pfam
Location: 62217 - 63071 (-)
Type: pfam
Location: 62217 - 63071 (-)
Gene ID: HRGMv2_1881_12_55
Type: TC
Location: 63117 - 63608 (-)
Type: TC
Location: 63117 - 63608 (-)
Gene ID: HRGMv2_1881_12_56
Type: pfam
Location: 63689 - 63976 (-)
Type: pfam
Location: 63689 - 63976 (-)
Gene ID: HRGMv2_1881_12_57
Type: pfam
Location: 63999 - 65432 (-)
Type: pfam
Location: 63999 - 65432 (-)
Gene ID: HRGMv2_1881_12_58
Type: TC
Location: 65481 - 66155 (-)
Type: TC
Location: 65481 - 66155 (-)
Gene ID: HRGMv2_1881_12_59
Type: TC
Location: 66213 - 66773 (-)
Type: TC
Location: 66213 - 66773 (-)
Gene ID: HRGMv2_1881_12_60
Type: TC
Location: 66742 - 67317 (-)
Type: TC
Location: 66742 - 67317 (-)
Gene ID: HRGMv2_1881_12_61
Type: pfam
Location: 67314 - 67880 (-)
Type: pfam
Location: 67314 - 67880 (-)
Gene ID: HRGMv2_1881_12_62
Type: STP
Location: 67895 - 68881 (-)
Type: STP
Location: 67895 - 68881 (-)
Gene ID: HRGMv2_1881_12_63
Type: TC
Location: 68895 - 69869 (-)
Type: TC
Location: 68895 - 69869 (-)
Gene ID: HRGMv2_1881_12_64
Type: TC
Location: 70100 - 70912 (+)
Type: TC
Location: 70100 - 70912 (+)
Gene ID: HRGMv2_1881_12_65
Type: TC
Location: 70920 - 71702 (+)
Type: TC
Location: 70920 - 71702 (+)
Gene ID: HRGMv2_1881_12_66
Type: TC
Location: 71707 - 72258 (+)
Type: TC
Location: 71707 - 72258 (+)
Gene ID: HRGMv2_1881_12_67
Type: TC
Location: 72276 - 72914 (+)
Type: TC
Location: 72276 - 72914 (+)
Gene ID: HRGMv2_1881_12_68
Type: TC
Location: 72911 - 73204 (+)
Type: TC
Location: 72911 - 73204 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kosakonia
Species
Kosakonia cowanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1881_12_62 | vegetarian > omnivore | 2.15937 | 0.01386 |
| HRGMv2_1881_12_62 | vegetarian > vegan | 1.30817 | 0.02017 |