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Cluster: HRGMv2_1881_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1881_9 HRGMv2_1881_9_85 90765 92114 + 2.A.40.7.5
TC HRGMv2_1881_9 HRGMv2_1881_9_86 92249 93895 + 2.A.36.3.1
pfam HRGMv2_1881_9 HRGMv2_1881_9_87 94020 95327 - GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
TC HRGMv2_1881_9 HRGMv2_1881_9_88 95476 97125 - 2.A.21.7.2
TC HRGMv2_1881_9 HRGMv2_1881_9_89 97122 97433 - 9.B.136.1.1
TC HRGMv2_1881_9 HRGMv2_1881_9_90 97611 99569 - 4.C.1.1.6
TC HRGMv2_1881_9 HRGMv2_1881_9_91 100255 101568 + 2.A.23.1.1
TF HRGMv2_1881_9 HRGMv2_1881_9_92 101736 102797 + LacI
TC HRGMv2_1881_9 HRGMv2_1881_9_93 102809 104155 - 2.A.1.14.7
NULL(UNKNOWN) HRGMv2_1881_9 HRGMv2_1881_9_94 104210 106705 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1881_9 HRGMv2_1881_9_95 106734 107816 - GH105
TC HRGMv2_1881_9 HRGMv2_1881_9_96 108067 109746 - 3.D.1.9.2
TC HRGMv2_1881_9 HRGMv2_1881_9_97 109795 110214 - 3.D.1.9.2
TF HRGMv2_1881_9 HRGMv2_1881_9_98 110485 111216 + Trans_reg_C
TC HRGMv2_1881_9 HRGMv2_1881_9_99 111389 111982 - 2.A.95.1.5
pfam HRGMv2_1881_9 HRGMv2_1881_9_100 112155 113261 + Semialdhyde_dh | Semialdhyde_dhC
CAZyme HRGMv2_1881_9 HRGMv2_1881_9_101 113519 115705 + CBM48 | GH13_9
CAZyme HRGMv2_1881_9 HRGMv2_1881_9_102 115702 117699 + CBM48 | GH13_11
pfam HRGMv2_1881_9 HRGMv2_1881_9_103 117693 118976 + NTP_transferase | NTP_transf_3 | Hexapep_GlmU
CAZyme HRGMv2_1881_9 HRGMv2_1881_9_104 119068 120501 + GT5
CAZyme HRGMv2_1881_9 HRGMv2_1881_9_105 120521 122968 + GT35
Gene ID: HRGMv2_1881_9_85
Type: TC
Location: 90765 - 92114 (+)
Gene ID: HRGMv2_1881_9_86
Type: TC
Location: 92249 - 93895 (+)
Gene ID: HRGMv2_1881_9_87
Type: pfam
Location: 94020 - 95327 (-)
Gene ID: HRGMv2_1881_9_88
Type: TC
Location: 95476 - 97125 (-)
Gene ID: HRGMv2_1881_9_89
Type: TC
Location: 97122 - 97433 (-)
Gene ID: HRGMv2_1881_9_90
Type: TC
Location: 97611 - 99569 (-)
Gene ID: HRGMv2_1881_9_91
Type: TC
Location: 100255 - 101568 (+)
Gene ID: HRGMv2_1881_9_92
Type: TF
Location: 101736 - 102797 (+)
Gene ID: HRGMv2_1881_9_93
Type: TC
Location: 102809 - 104155 (-)
Gene ID: HRGMv2_1881_9_94
Type:
Location: 104210 - 106705 (-)
Gene ID: HRGMv2_1881_9_95
Type: CAZyme
Location: 106734 - 107816 (-)
Gene ID: HRGMv2_1881_9_96
Type: TC
Location: 108067 - 109746 (-)
Gene ID: HRGMv2_1881_9_97
Type: TC
Location: 109795 - 110214 (-)
Gene ID: HRGMv2_1881_9_98
Type: TF
Location: 110485 - 111216 (+)
Gene ID: HRGMv2_1881_9_99
Type: TC
Location: 111389 - 111982 (-)
Gene ID: HRGMv2_1881_9_100
Type: pfam
Location: 112155 - 113261 (+)
Gene ID: HRGMv2_1881_9_101
Type: CAZyme
Location: 113519 - 115705 (+)
Gene ID: HRGMv2_1881_9_102
Type: CAZyme
Location: 115702 - 117699 (+)
Gene ID: HRGMv2_1881_9_103
Type: pfam
Location: 117693 - 118976 (+)
Gene ID: HRGMv2_1881_9_104
Type: CAZyme
Location: 119068 - 120501 (+)
Gene ID: HRGMv2_1881_9_105
Type: CAZyme
Location: 120521 - 122968 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1881_9_89 vegan > omnivore 1.05744 0.00507
HRGMv2_1881_9_103 vegetarian > vegan 1.11565 0.02178

🧭 Explore Read Mapping of CGC

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