Cluster: HRGMv2_1881_CGC35
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1881
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1881_7 | HRGMv2_1881_7_165 | 180434 | 181720 | - | 2.A.23.1.7 |
| STP | HRGMv2_1881_7 | HRGMv2_1881_7_166 | 181886 | 183580 | - | EAL | GGDEF |
| TC | HRGMv2_1881_7 | HRGMv2_1881_7_167 | 183800 | 187288 | - | 1.B.55.3.1 |
| CAZyme | HRGMv2_1881_7 | HRGMv2_1881_7_168 | 187270 | 188376 | - | GH8 |
| TC | HRGMv2_1881_7 | HRGMv2_1881_7_169 | 188383 | 190758 | - | 4.D.3.1.6 |
| CAZyme | HRGMv2_1881_7 | HRGMv2_1881_7_170 | 190805 | 193408 | - | GT2 |
Gene ID: HRGMv2_1881_7_165
Type: TC
Location: 180434 - 181720 (-)
Type: TC
Location: 180434 - 181720 (-)
Gene ID: HRGMv2_1881_7_166
Type: STP
Location: 181886 - 183580 (-)
Type: STP
Location: 181886 - 183580 (-)
Gene ID: HRGMv2_1881_7_167
Type: TC
Location: 183800 - 187288 (-)
Type: TC
Location: 183800 - 187288 (-)
Gene ID: HRGMv2_1881_7_168
Type: CAZyme
Location: 187270 - 188376 (-)
Type: CAZyme
Location: 187270 - 188376 (-)
Gene ID: HRGMv2_1881_7_169
Type: TC
Location: 188383 - 190758 (-)
Type: TC
Location: 188383 - 190758 (-)
Gene ID: HRGMv2_1881_7_170
Type: CAZyme
Location: 190805 - 193408 (-)
Type: CAZyme
Location: 190805 - 193408 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kosakonia
Species
Kosakonia cowanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.