Cluster: HRGMv2_1881_CGC29
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 10
- Substrate:
- Genome ID: HRGMv2_1881
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1881_5 | HRGMv2_1881_5_156 | 165493 | 166770 | - | GT30 |
| CAZyme | HRGMv2_1881_5 | HRGMv2_1881_5_157 | 167211 | 168209 | + | GT9 |
| CAZyme | HRGMv2_1881_5 | HRGMv2_1881_5_158 | 168209 | 169333 | + | GT4 |
| pfam | HRGMv2_1881_5 | HRGMv2_1881_5_159 | 169326 | 170123 | + | Kdo |
| CAZyme | HRGMv2_1881_5 | HRGMv2_1881_5_160 | 170143 | 171237 | + | GT4 |
| CAZyme | HRGMv2_1881_5 | HRGMv2_1881_5_161 | 171234 | 172250 | + | GT8 |
| CAZyme | HRGMv2_1881_5 | HRGMv2_1881_5_162 | 172270 | 173292 | + | GT8 |
| pfam | HRGMv2_1881_5 | HRGMv2_1881_5_163 | 173313 | 174011 | + | ABC1 | WaaY |
| CAZyme | HRGMv2_1881_5 | HRGMv2_1881_5_164 | 174099 | 174956 | + | GT73 |
| CAZyme | HRGMv2_1881_5 | HRGMv2_1881_5_165 | 174956 | 176065 | + | GT9 |
| TC | HRGMv2_1881_5 | HRGMv2_1881_5_166 | 176100 | 177356 | - | 9.B.67.5.1 |
| CAZyme | HRGMv2_1881_5 | HRGMv2_1881_5_167 | 177367 | 178326 | - | GT9 |
| CAZyme | HRGMv2_1881_5 | HRGMv2_1881_5_168 | 178330 | 179376 | - | GT9 |
Gene ID: HRGMv2_1881_5_156
Type: CAZyme
Location: 165493 - 166770 (-)
Type: CAZyme
Location: 165493 - 166770 (-)
Gene ID: HRGMv2_1881_5_157
Type: CAZyme
Location: 167211 - 168209 (+)
Type: CAZyme
Location: 167211 - 168209 (+)
Gene ID: HRGMv2_1881_5_158
Type: CAZyme
Location: 168209 - 169333 (+)
Type: CAZyme
Location: 168209 - 169333 (+)
Gene ID: HRGMv2_1881_5_159
Type: pfam
Location: 169326 - 170123 (+)
Type: pfam
Location: 169326 - 170123 (+)
Gene ID: HRGMv2_1881_5_160
Type: CAZyme
Location: 170143 - 171237 (+)
Type: CAZyme
Location: 170143 - 171237 (+)
Gene ID: HRGMv2_1881_5_161
Type: CAZyme
Location: 171234 - 172250 (+)
Type: CAZyme
Location: 171234 - 172250 (+)
Gene ID: HRGMv2_1881_5_162
Type: CAZyme
Location: 172270 - 173292 (+)
Type: CAZyme
Location: 172270 - 173292 (+)
Gene ID: HRGMv2_1881_5_163
Type: pfam
Location: 173313 - 174011 (+)
Type: pfam
Location: 173313 - 174011 (+)
Gene ID: HRGMv2_1881_5_164
Type: CAZyme
Location: 174099 - 174956 (+)
Type: CAZyme
Location: 174099 - 174956 (+)
Gene ID: HRGMv2_1881_5_165
Type: CAZyme
Location: 174956 - 176065 (+)
Type: CAZyme
Location: 174956 - 176065 (+)
Gene ID: HRGMv2_1881_5_166
Type: TC
Location: 176100 - 177356 (-)
Type: TC
Location: 176100 - 177356 (-)
Gene ID: HRGMv2_1881_5_167
Type: CAZyme
Location: 177367 - 178326 (-)
Type: CAZyme
Location: 177367 - 178326 (-)
Gene ID: HRGMv2_1881_5_168
Type: CAZyme
Location: 178330 - 179376 (-)
Type: CAZyme
Location: 178330 - 179376 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kosakonia
Species
Kosakonia cowanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.