Cluster: HRGMv2_1881_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1881
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1881_2 | HRGMv2_1881_2_82 | 93309 | 94679 | + | 2.A.3.1.3 |
| TC | HRGMv2_1881_2 | HRGMv2_1881_2_83 | 94852 | 96258 | + | 2.A.2.3.4 |
| CAZyme | HRGMv2_1881_2 | HRGMv2_1881_2_84 | 96258 | 97208 | + | GH43_26 |
| TC | HRGMv2_1881_2 | HRGMv2_1881_2_85 | 97224 | 98078 | - | 9.B.125.1.1 |
Gene ID: HRGMv2_1881_2_82
Type: TC
Location: 93309 - 94679 (+)
Type: TC
Location: 93309 - 94679 (+)
Gene ID: HRGMv2_1881_2_83
Type: TC
Location: 94852 - 96258 (+)
Type: TC
Location: 94852 - 96258 (+)
Gene ID: HRGMv2_1881_2_84
Type: CAZyme
Location: 96258 - 97208 (+)
Type: CAZyme
Location: 96258 - 97208 (+)
Gene ID: HRGMv2_1881_2_85
Type: TC
Location: 97224 - 98078 (-)
Type: TC
Location: 97224 - 98078 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kosakonia
Species
Kosakonia cowanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1881_2_84 | vegan > omnivore | 2.74848 | 0.00928 |
| HRGMv2_1881_2_84 | vegetarian > omnivore | 4.04320 | 0.01386 |
| HRGMv2_1881_2_85 | vegetarian > omnivore | 1.61737 | 0.03699 |
| HRGMv2_1881_2_85 | vegetarian > vegan | 2.44178 | 0.02017 |