Cluster: HRGMv2_1878_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: chitin
- Genome ID: HRGMv2_1878
- CGC Family ID: CGCFAM_00218
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1878_3 | HRGMv2_1878_3_51 | 55271 | 55588 | + | 4.A.3.2.1 |
| TC | HRGMv2_1878_3 | HRGMv2_1878_3_52 | 55673 | 57031 | + | 4.A.3.2.1 |
| TC | HRGMv2_1878_3 | HRGMv2_1878_3_53 | 57078 | 57434 | + | 4.A.3.2.7 |
| TF | HRGMv2_1878_3 | HRGMv2_1878_3_54 | 57463 | 58281 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_1878_3 | HRGMv2_1878_3_55 | 58385 | 59740 | + | GH4 |
Gene ID: HRGMv2_1878_3_51
Type: TC
Location: 55271 - 55588 (+)
Type: TC
Location: 55271 - 55588 (+)
Gene ID: HRGMv2_1878_3_52
Type: TC
Location: 55673 - 57031 (+)
Type: TC
Location: 55673 - 57031 (+)
Gene ID: HRGMv2_1878_3_53
Type: TC
Location: 57078 - 57434 (+)
Type: TC
Location: 57078 - 57434 (+)
Gene ID: HRGMv2_1878_3_54
Type: TF
Location: 57463 - 58281 (+)
Type: TF
Location: 57463 - 58281 (+)
Gene ID: HRGMv2_1878_3_55
Type: CAZyme
Location: 58385 - 59740 (+)
Type: CAZyme
Location: 58385 - 59740 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Leclercia
Species
Leclercia adecarboxylata
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.