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Cluster: HRGMv2_1878_CGC64

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1878_43 HRGMv2_1878_43_3 4085 6256 + AA2
pfam HRGMv2_1878_43 HRGMv2_1878_43_4 6361 7464 - Fe-ADH | Fe-ADH_2
pfam HRGMv2_1878_43 HRGMv2_1878_43_5 7477 8139 - TAL_FSA
TC HRGMv2_1878_43 HRGMv2_1878_43_6 8151 10652 - 4.A.2.1.10
TC HRGMv2_1878_43 HRGMv2_1878_43_7 10960 12039 + 4.A.2.1.10
TC HRGMv2_1878_43 HRGMv2_1878_43_8 12054 12374 + 4.A.2.1.10
pfam HRGMv2_1878_43 HRGMv2_1878_43_9 12423 14720 + Gly_radical | PFL-like
pfam HRGMv2_1878_43 HRGMv2_1878_43_10 14686 15564 + Radical_SAM | Fer4_12
TC HRGMv2_1878_43 HRGMv2_1878_43_11 15566 15922 + 4.A.2.1.10
Gene ID: HRGMv2_1878_43_3
Type: CAZyme
Location: 4085 - 6256 (+)
Gene ID: HRGMv2_1878_43_4
Type: pfam
Location: 6361 - 7464 (-)
Gene ID: HRGMv2_1878_43_5
Type: pfam
Location: 7477 - 8139 (-)
Gene ID: HRGMv2_1878_43_6
Type: TC
Location: 8151 - 10652 (-)
Gene ID: HRGMv2_1878_43_7
Type: TC
Location: 10960 - 12039 (+)
Gene ID: HRGMv2_1878_43_8
Type: TC
Location: 12054 - 12374 (+)
Gene ID: HRGMv2_1878_43_9
Type: pfam
Location: 12423 - 14720 (+)
Gene ID: HRGMv2_1878_43_10
Type: pfam
Location: 14686 - 15564 (+)
Gene ID: HRGMv2_1878_43_11
Type: TC
Location: 15566 - 15922 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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