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Cluster: HRGMv2_1878_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1878_2 HRGMv2_1878_2_219 239524 240438 - 1.B.21.1.1
TC HRGMv2_1878_2 HRGMv2_1878_2_220 240505 241587 - 3.A.1.1.46
pfam HRGMv2_1878_2 HRGMv2_1878_2_221 241590 242267 - Hydrolase | HAD_2
CAZyme HRGMv2_1878_2 HRGMv2_1878_2_222 242257 244536 - GH65
CAZyme HRGMv2_1878_2 HRGMv2_1878_2_223 244530 245585 - GH179
pfam HRGMv2_1878_2 HRGMv2_1878_2_224 245600 246388 - AP_endonuc_2
pfam HRGMv2_1878_2 HRGMv2_1878_2_225 246406 247458 - ADH_zinc_N
TC HRGMv2_1878_2 HRGMv2_1878_2_226 247487 248329 - 3.A.1.1.46
TC HRGMv2_1878_2 HRGMv2_1878_2_227 248316 249197 - 3.A.1.1.46
TC HRGMv2_1878_2 HRGMv2_1878_2_228 249220 250512 - 3.A.1.1.46
CAZyme HRGMv2_1878_2 HRGMv2_1878_2_229 250527 252224 - GH13_18
Gene ID: HRGMv2_1878_2_219
Type: TC
Location: 239524 - 240438 (-)
Gene ID: HRGMv2_1878_2_220
Type: TC
Location: 240505 - 241587 (-)
Gene ID: HRGMv2_1878_2_221
Type: pfam
Location: 241590 - 242267 (-)
Gene ID: HRGMv2_1878_2_222
Type: CAZyme
Location: 242257 - 244536 (-)
Gene ID: HRGMv2_1878_2_223
Type: CAZyme
Location: 244530 - 245585 (-)
Gene ID: HRGMv2_1878_2_224
Type: pfam
Location: 245600 - 246388 (-)
Gene ID: HRGMv2_1878_2_225
Type: pfam
Location: 246406 - 247458 (-)
Gene ID: HRGMv2_1878_2_226
Type: TC
Location: 247487 - 248329 (-)
Gene ID: HRGMv2_1878_2_227
Type: TC
Location: 248316 - 249197 (-)
Gene ID: HRGMv2_1878_2_228
Type: TC
Location: 249220 - 250512 (-)
Gene ID: HRGMv2_1878_2_229
Type: CAZyme
Location: 250527 - 252224 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1878_2_219 vegetarian > omnivore 3.50323 0.02412
HRGMv2_1878_2_219 vegetarian > vegan 1.55446 0.03350

🧭 Explore Read Mapping of CGC

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