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Cluster: HRGMv2_1878_CGC59

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1878_33 HRGMv2_1878_33_11 10482 11951 - 3.A.1.26.3
TF HRGMv2_1878_33 HRGMv2_1878_33_12 12019 12807 - HTH_1
TC HRGMv2_1878_33 HRGMv2_1878_33_13 12935 13084 + 8.A.50.1.1
TC HRGMv2_1878_33 HRGMv2_1878_33_14 13266 14042 + 3.A.1.8.1
TC HRGMv2_1878_33 HRGMv2_1878_33_15 14039 14728 + 3.A.1.8.1
TC HRGMv2_1878_33 HRGMv2_1878_33_16 14731 15789 + 3.A.1.8.1
pfam HRGMv2_1878_33 HRGMv2_1878_33_17 15790 16608 - Hydrolase | S6PP | S6PP | Hydrolase_3
pfam HRGMv2_1878_33 HRGMv2_1878_33_18 16762 17757 + Lactonase
CAZyme HRGMv2_1878_33 HRGMv2_1878_33_19 17977 19260 - CE8
Gene ID: HRGMv2_1878_33_11
Type: TC
Location: 10482 - 11951 (-)
Gene ID: HRGMv2_1878_33_12
Type: TF
Location: 12019 - 12807 (-)
Gene ID: HRGMv2_1878_33_13
Type: TC
Location: 12935 - 13084 (+)
Gene ID: HRGMv2_1878_33_14
Type: TC
Location: 13266 - 14042 (+)
Gene ID: HRGMv2_1878_33_15
Type: TC
Location: 14039 - 14728 (+)
Gene ID: HRGMv2_1878_33_16
Type: TC
Location: 14731 - 15789 (+)
Gene ID: HRGMv2_1878_33_17
Type: pfam
Location: 15790 - 16608 (-)
Gene ID: HRGMv2_1878_33_18
Type: pfam
Location: 16762 - 17757 (+)
Gene ID: HRGMv2_1878_33_19
Type: CAZyme
Location: 17977 - 19260 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1878_33_16 vegetarian > vegan 1.56322 0.03350

🧭 Explore Read Mapping of CGC

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