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Cluster: HRGMv2_1878_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1878_1 HRGMv2_1878_1_258 292242 293465 + GT4
pfam HRGMv2_1878_1 HRGMv2_1878_1_259 293469 294905 + NTP_transferase | MannoseP_isomer | Cupin_2 | NTP_transf_3 | ManC_GMP_beta-helix
pfam HRGMv2_1878_1 HRGMv2_1878_1_260 295015 296385 + PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
TC HRGMv2_1878_1 HRGMv2_1878_1_261 296435 297829 + 9.B.18.1.1
TC HRGMv2_1878_1 HRGMv2_1878_1_262 297831 299309 + 2.A.66.2.7
pfam HRGMv2_1878_1 HRGMv2_1878_1_263 299325 300605 + PS_pyruv_trans
CAZyme HRGMv2_1878_1 HRGMv2_1878_1_264 300602 301822 + GT4
Gene ID: HRGMv2_1878_1_258
Type: CAZyme
Location: 292242 - 293465 (+)
Gene ID: HRGMv2_1878_1_259
Type: pfam
Location: 293469 - 294905 (+)
Gene ID: HRGMv2_1878_1_260
Type: pfam
Location: 295015 - 296385 (+)
Gene ID: HRGMv2_1878_1_261
Type: TC
Location: 296435 - 297829 (+)
Gene ID: HRGMv2_1878_1_262
Type: TC
Location: 297831 - 299309 (+)
Gene ID: HRGMv2_1878_1_263
Type: pfam
Location: 299325 - 300605 (+)
Gene ID: HRGMv2_1878_1_264
Type: CAZyme
Location: 300602 - 301822 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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