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Cluster: HRGMv2_1878_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1878_23 HRGMv2_1878_23_55 56009 56749 + 9.B.99.1.1
CAZyme HRGMv2_1878_23 HRGMv2_1878_23_56 56858 58816 - GH127
TC HRGMv2_1878_23 HRGMv2_1878_23_57 58827 60227 - 2.A.2.3.6
TF HRGMv2_1878_23 HRGMv2_1878_23_58 60453 61271 + HTH_AraC
TC HRGMv2_1878_23 HRGMv2_1878_23_59 61397 61867 + 3.D.1.9.2
STP HRGMv2_1878_23 HRGMv2_1878_23_60 61872 63128 - Aminotran_1_2
CAZyme HRGMv2_1878_23 HRGMv2_1878_23_61 63354 65384 - GH13_19
CAZyme HRGMv2_1878_23 HRGMv2_1878_23_62 65950 66522 + GH73
TF HRGMv2_1878_23 HRGMv2_1878_23_63 66562 67740 - HTH_AraC | HTH_AraC
TC HRGMv2_1878_23 HRGMv2_1878_23_64 67783 68964 - 3.A.1.2.4
TC HRGMv2_1878_23 HRGMv2_1878_23_65 68942 70483 - 3.A.1.2.4
TC HRGMv2_1878_23 HRGMv2_1878_23_66 70555 71547 - 3.A.1.2.4
Gene ID: HRGMv2_1878_23_55
Type: TC
Location: 56009 - 56749 (+)
Gene ID: HRGMv2_1878_23_56
Type: CAZyme
Location: 56858 - 58816 (-)
Gene ID: HRGMv2_1878_23_57
Type: TC
Location: 58827 - 60227 (-)
Gene ID: HRGMv2_1878_23_58
Type: TF
Location: 60453 - 61271 (+)
Gene ID: HRGMv2_1878_23_59
Type: TC
Location: 61397 - 61867 (+)
Gene ID: HRGMv2_1878_23_60
Type: STP
Location: 61872 - 63128 (-)
Gene ID: HRGMv2_1878_23_61
Type: CAZyme
Location: 63354 - 65384 (-)
Gene ID: HRGMv2_1878_23_62
Type: CAZyme
Location: 65950 - 66522 (+)
Gene ID: HRGMv2_1878_23_63
Type: TF
Location: 66562 - 67740 (-)
Gene ID: HRGMv2_1878_23_64
Type: TC
Location: 67783 - 68964 (-)
Gene ID: HRGMv2_1878_23_65
Type: TC
Location: 68942 - 70483 (-)
Gene ID: HRGMv2_1878_23_66
Type: TC
Location: 70555 - 71547 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1878_23_61 vegetarian > omnivore 1.02581 0.02798
HRGMv2_1878_23_62 vegetarian > omnivore 1.64288 0.02798

🧭 Explore Read Mapping of CGC

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