Cluster: HRGMv2_1878_CGC44

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_1878_22	HRGMv2_1878_22_3	1649	3019	+	2.A.3.1.3
TC	HRGMv2_1878_22	HRGMv2_1878_22_4	3180	4577	+	2.A.2.3.4
CAZyme	HRGMv2_1878_22	HRGMv2_1878_22_5	4588	5538	+	GH43_26
TC	HRGMv2_1878_22	HRGMv2_1878_22_6	5557	6411	-	9.B.125.1.1
pfam	HRGMv2_1878_22	HRGMv2_1878_22_7	6408	6971	-	Amidase_2
pfam	HRGMv2_1878_22	HRGMv2_1878_22_8	7059	7952	+	QRPTase_C \| QRPTase_N
TC	HRGMv2_1878_22	HRGMv2_1878_22_9	8137	8589	+	3.A.15.2.1
TC	HRGMv2_1878_22	HRGMv2_1878_22_10	8586	9971	+	3.A.15.2.1
TC	HRGMv2_1878_22	HRGMv2_1878_22_11	9961	11157	+	3.A.15.2.1

Gene ID: HRGMv2_1878_22_3
Type: TC
Location: 1649 - 3019 (+)

Gene ID: HRGMv2_1878_22_4
Type: TC
Location: 3180 - 4577 (+)

Gene ID: HRGMv2_1878_22_5
Type: CAZyme
Location: 4588 - 5538 (+)

Gene ID: HRGMv2_1878_22_6
Type: TC
Location: 5557 - 6411 (-)

Gene ID: HRGMv2_1878_22_7
Type: pfam
Location: 6408 - 6971 (-)

Gene ID: HRGMv2_1878_22_8
Type: pfam
Location: 7059 - 7952 (+)

Gene ID: HRGMv2_1878_22_9
Type: TC
Location: 8137 - 8589 (+)

Gene ID: HRGMv2_1878_22_10
Type: TC
Location: 8586 - 9971 (+)

Gene ID: HRGMv2_1878_22_11
Type: TC
Location: 9961 - 11157 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1878_22_4	vegetarian > omnivore	1.01794	0.02798
HRGMv2_1878_22_5	vegetarian > omnivore	2.57019	0.02412
HRGMv2_1878_22_5	vegetarian > vegan	1.07036	0.03350
HRGMv2_1878_22_6	vegetarian > omnivore	2.16576	0.02798