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Cluster: HRGMv2_1878_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1878_20 HRGMv2_1878_20_13 13816 15306 + 4.A.1.1.2
STP HRGMv2_1878_20 HRGMv2_1878_20_14 15434 17086 + SBP_bac_5
TF HRGMv2_1878_20 HRGMv2_1878_20_15 17087 18100 - LacI
TC HRGMv2_1878_20 HRGMv2_1878_20_16 18345 19796 + 4.A.1.2.3
CAZyme HRGMv2_1878_20 HRGMv2_1878_20_17 19815 21239 + GH1
STP HRGMv2_1878_20 HRGMv2_1878_20_18 21438 22436 + Peripla_BP_2
TC HRGMv2_1878_20 HRGMv2_1878_20_19 22436 23473 + 3.A.1.14.20
TC HRGMv2_1878_20 HRGMv2_1878_20_20 23473 24234 + 3.A.1.14.8
Gene ID: HRGMv2_1878_20_13
Type: TC
Location: 13816 - 15306 (+)
Gene ID: HRGMv2_1878_20_14
Type: STP
Location: 15434 - 17086 (+)
Gene ID: HRGMv2_1878_20_15
Type: TF
Location: 17087 - 18100 (-)
Gene ID: HRGMv2_1878_20_16
Type: TC
Location: 18345 - 19796 (+)
Gene ID: HRGMv2_1878_20_17
Type: CAZyme
Location: 19815 - 21239 (+)
Gene ID: HRGMv2_1878_20_18
Type: STP
Location: 21438 - 22436 (+)
Gene ID: HRGMv2_1878_20_19
Type: TC
Location: 22436 - 23473 (+)
Gene ID: HRGMv2_1878_20_20
Type: TC
Location: 23473 - 24234 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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