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Cluster: HRGMv2_1878_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1878_19 HRGMv2_1878_19_61 66162 67409 - CE4
pfam HRGMv2_1878_19 HRGMv2_1878_19_62 67481 67912 - EIIA-man
TC HRGMv2_1878_19 HRGMv2_1878_19_63 68018 68788 - 3.A.1.105.17
TC HRGMv2_1878_19 HRGMv2_1878_19_64 68785 69711 - 3.A.1.105.17
TC HRGMv2_1878_19 HRGMv2_1878_19_65 69818 70480 + 2.A.53.3.8
STP HRGMv2_1878_19 HRGMv2_1878_19_66 70608 71144 - Pribosyltran
pfam HRGMv2_1878_19 HRGMv2_1878_19_67 71350 73737 + PQQ | PQQ | PQQ | PQQ | PQQ | PQQ | PQQ_2 | PQQ_2
CAZyme HRGMv2_1878_19 HRGMv2_1878_19_68 73809 75419 - AA1
TC HRGMv2_1878_19 HRGMv2_1878_19_69 75526 75873 + 8.A.2.1.3
Gene ID: HRGMv2_1878_19_61
Type: CAZyme
Location: 66162 - 67409 (-)
Gene ID: HRGMv2_1878_19_62
Type: pfam
Location: 67481 - 67912 (-)
Gene ID: HRGMv2_1878_19_63
Type: TC
Location: 68018 - 68788 (-)
Gene ID: HRGMv2_1878_19_64
Type: TC
Location: 68785 - 69711 (-)
Gene ID: HRGMv2_1878_19_65
Type: TC
Location: 69818 - 70480 (+)
Gene ID: HRGMv2_1878_19_66
Type: STP
Location: 70608 - 71144 (-)
Gene ID: HRGMv2_1878_19_67
Type: pfam
Location: 71350 - 73737 (+)
Gene ID: HRGMv2_1878_19_68
Type: CAZyme
Location: 73809 - 75419 (-)
Gene ID: HRGMv2_1878_19_69
Type: TC
Location: 75526 - 75873 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1878_19_61 vegetarian > vegan 1.38485 0.03350

🧭 Explore Read Mapping of CGC

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