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Cluster: HRGMv2_1878_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1878_19 HRGMv2_1878_19_41 42867 43667 + 3.A.1.13.1
TC HRGMv2_1878_19 HRGMv2_1878_19_42 43685 44311 + 1.A.62.2.2
pfam HRGMv2_1878_19 HRGMv2_1878_19_43 44403 44747 - Fe-S_biosyn
TC HRGMv2_1878_19 HRGMv2_1878_19_44 44827 46203 - 2.A.49.5.5
pfam HRGMv2_1878_19 HRGMv2_1878_19_45 46381 47661 + Aminotran_3
TC HRGMv2_1878_19 HRGMv2_1878_19_46 47769 49751 - 3.A.1.14.3
TC HRGMv2_1878_19 HRGMv2_1878_19_47 49748 50641 - 3.A.1.14.3
TC HRGMv2_1878_19 HRGMv2_1878_19_48 50641 51438 - 3.A.1.14.3
TC HRGMv2_1878_19 HRGMv2_1878_19_49 51493 53745 - 1.B.14.1.2
CAZyme HRGMv2_1878_19 HRGMv2_1878_19_50 53979 56501 - GT51
Gene ID: HRGMv2_1878_19_41
Type: TC
Location: 42867 - 43667 (+)
Gene ID: HRGMv2_1878_19_42
Type: TC
Location: 43685 - 44311 (+)
Gene ID: HRGMv2_1878_19_43
Type: pfam
Location: 44403 - 44747 (-)
Gene ID: HRGMv2_1878_19_44
Type: TC
Location: 44827 - 46203 (-)
Gene ID: HRGMv2_1878_19_45
Type: pfam
Location: 46381 - 47661 (+)
Gene ID: HRGMv2_1878_19_46
Type: TC
Location: 47769 - 49751 (-)
Gene ID: HRGMv2_1878_19_47
Type: TC
Location: 49748 - 50641 (-)
Gene ID: HRGMv2_1878_19_48
Type: TC
Location: 50641 - 51438 (-)
Gene ID: HRGMv2_1878_19_49
Type: TC
Location: 51493 - 53745 (-)
Gene ID: HRGMv2_1878_19_50
Type: CAZyme
Location: 53979 - 56501 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1878_19_42 vegetarian > omnivore 1.22591 0.02798
HRGMv2_1878_19_44 vegetarian > vegan 1.08760 0.03350

🧭 Explore Read Mapping of CGC

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