Cluster: HRGMv2_1878_CGC28
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1878
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1878_11 | HRGMv2_1878_11_12 | 9183 | 10550 | - | GH4 |
| TC | HRGMv2_1878_11 | HRGMv2_1878_11_13 | 10562 | 12106 | - | 4.A.1.1.13 |
| peptidase | HRGMv2_1878_11 | HRGMv2_1878_11_14 | 12392 | 17353 | + | I39.008 |
| CAZyme | HRGMv2_1878_11 | HRGMv2_1878_11_15 | 17355 | 19679 | + | GT51 |
Gene ID: HRGMv2_1878_11_12
Type: CAZyme
Location: 9183 - 10550 (-)
Type: CAZyme
Location: 9183 - 10550 (-)
Gene ID: HRGMv2_1878_11_13
Type: TC
Location: 10562 - 12106 (-)
Type: TC
Location: 10562 - 12106 (-)
Gene ID: HRGMv2_1878_11_14
Type: peptidase
Location: 12392 - 17353 (+)
Type: peptidase
Location: 12392 - 17353 (+)
Gene ID: HRGMv2_1878_11_15
Type: CAZyme
Location: 17355 - 19679 (+)
Type: CAZyme
Location: 17355 - 19679 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Leclercia
Species
Leclercia adecarboxylata
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1878_11_12 | vegan > omnivore | 1.07289 | 0.04981 |
| HRGMv2_1878_11_12 | vegetarian > omnivore | 1.06688 | 0.02798 |
| HRGMv2_1878_11_13 | vegetarian > omnivore | 2.52177 | 0.02798 |
| HRGMv2_1878_11_13 | vegetarian > vegan | 1.56407 | 0.03350 |