Cluster: HRGMv2_1878_CGC25

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_1878_10	HRGMv2_1878_10_28	29905	30219	+	4.A.3.2.6
TC	HRGMv2_1878_10	HRGMv2_1878_10_29	30232	31557	+	4.A.3.2.6
CAZyme	HRGMv2_1878_10	HRGMv2_1878_10_30	31575	32960	+	GH1
TC	HRGMv2_1878_10	HRGMv2_1878_10_31	32972	33274	+	4.A.3.2.1
pfam	HRGMv2_1878_10	HRGMv2_1878_10_32	33435	34814	+	LamB
TC	HRGMv2_1878_10	HRGMv2_1878_10_33	34963	35868	+	2.A.7.3.12
TC	HRGMv2_1878_10	HRGMv2_1878_10_34	35991	37184	-	2.A.1.2.26

Gene ID: HRGMv2_1878_10_28
Type: TC
Location: 29905 - 30219 (+)

Gene ID: HRGMv2_1878_10_29
Type: TC
Location: 30232 - 31557 (+)

Gene ID: HRGMv2_1878_10_30
Type: CAZyme
Location: 31575 - 32960 (+)

Gene ID: HRGMv2_1878_10_31
Type: TC
Location: 32972 - 33274 (+)

Gene ID: HRGMv2_1878_10_32
Type: pfam
Location: 33435 - 34814 (+)

Gene ID: HRGMv2_1878_10_33
Type: TC
Location: 34963 - 35868 (+)

Gene ID: HRGMv2_1878_10_34
Type: TC
Location: 35991 - 37184 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1878_10_28	vegetarian > omnivore	2.65554	0.02798
HRGMv2_1878_10_28	vegetarian > vegan	1.66611	0.03350
HRGMv2_1878_10_29	vegetarian > omnivore	1.58445	0.02798
HRGMv2_1878_10_29	vegetarian > vegan	1.29233	0.03350
HRGMv2_1878_10_30	vegetarian > omnivore	1.53266	0.02798
HRGMv2_1878_10_30	vegetarian > vegan	1.39208	0.03350
HRGMv2_1878_10_31	vegetarian > omnivore	1.46112	0.02798
HRGMv2_1878_10_32	vegetarian > vegan	1.68876	0.03350
HRGMv2_1878_10_33	vegetarian > omnivore	1.37508	0.02798