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Cluster: HRGMv2_1878_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1878_9 HRGMv2_1878_9_8 5506 6486 - PL5_1
STP HRGMv2_1878_9 HRGMv2_1878_9_9 6586 7872 + BLUF | EAL
TC HRGMv2_1878_9 HRGMv2_1878_9_10 8075 9625 + 1.B.52.2.2
CAZyme HRGMv2_1878_9 HRGMv2_1878_9_11 9871 11643 + GH13_10
CAZyme HRGMv2_1878_9 HRGMv2_1878_9_12 11643 14159 + GH13_26
CAZyme HRGMv2_1878_9 HRGMv2_1878_9_13 14189 16264 + CBM48 | GH13_11
pfam HRGMv2_1878_9 HRGMv2_1878_9_14 16274 16558 - VF530
pfam HRGMv2_1878_9 HRGMv2_1878_9_15 16664 17401 + Metallophos | Metallophos_2
TC HRGMv2_1878_9 HRGMv2_1878_9_16 17471 18727 + 2.A.1.38.1
Gene ID: HRGMv2_1878_9_8
Type: CAZyme
Location: 5506 - 6486 (-)
Gene ID: HRGMv2_1878_9_9
Type: STP
Location: 6586 - 7872 (+)
Gene ID: HRGMv2_1878_9_10
Type: TC
Location: 8075 - 9625 (+)
Gene ID: HRGMv2_1878_9_11
Type: CAZyme
Location: 9871 - 11643 (+)
Gene ID: HRGMv2_1878_9_12
Type: CAZyme
Location: 11643 - 14159 (+)
Gene ID: HRGMv2_1878_9_13
Type: CAZyme
Location: 14189 - 16264 (+)
Gene ID: HRGMv2_1878_9_14
Type: pfam
Location: 16274 - 16558 (-)
Gene ID: HRGMv2_1878_9_15
Type: pfam
Location: 16664 - 17401 (+)
Gene ID: HRGMv2_1878_9_16
Type: TC
Location: 17471 - 18727 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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