Cluster: HRGMv2_1878_CGC18
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1878
- CGC Family ID: CGCFAM_00236
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1878_7 | HRGMv2_1878_7_52 | 60764 | 61798 | - | 9.B.8.3.4 |
| pfam | HRGMv2_1878_7 | HRGMv2_1878_7_53 | 61795 | 62664 | - | HTH_31 | MLTR_LBD |
| TC | HRGMv2_1878_7 | HRGMv2_1878_7_54 | 62772 | 64208 | + | 2.A.1.3.38 |
| TC | HRGMv2_1878_7 | HRGMv2_1878_7_55 | 64275 | 65519 | + | 1.A.23.4.5 |
| TF | HRGMv2_1878_7 | HRGMv2_1878_7_56 | 65521 | 66501 | - | LacI |
| CAZyme | HRGMv2_1878_7 | HRGMv2_1878_7_57 | 66577 | 67719 | - | GH179 |
| pfam | HRGMv2_1878_7 | HRGMv2_1878_7_58 | 67712 | 68737 | - | AP_endonuc_2 |
| TC | HRGMv2_1878_7 | HRGMv2_1878_7_59 | 68749 | 69990 | - | 2.A.1.10.4 |
| pfam | HRGMv2_1878_7 | HRGMv2_1878_7_60 | 70267 | 70629 | + | Gp49 |
| TF | HRGMv2_1878_7 | HRGMv2_1878_7_61 | 70617 | 70916 | + | HTH_3 |
| TC | HRGMv2_1878_7 | HRGMv2_1878_7_62 | 71058 | 72443 | - | 2.A.3.1.1 |
| pfam | HRGMv2_1878_7 | HRGMv2_1878_7_63 | 72547 | 74520 | - | PhoX |
| TC | HRGMv2_1878_7 | HRGMv2_1878_7_64 | 74640 | 76826 | - | 1.B.14.1.15 |
Gene ID: HRGMv2_1878_7_52
Type: TC
Location: 60764 - 61798 (-)
Type: TC
Location: 60764 - 61798 (-)
Gene ID: HRGMv2_1878_7_53
Type: pfam
Location: 61795 - 62664 (-)
Type: pfam
Location: 61795 - 62664 (-)
Gene ID: HRGMv2_1878_7_54
Type: TC
Location: 62772 - 64208 (+)
Type: TC
Location: 62772 - 64208 (+)
Gene ID: HRGMv2_1878_7_55
Type: TC
Location: 64275 - 65519 (+)
Type: TC
Location: 64275 - 65519 (+)
Gene ID: HRGMv2_1878_7_56
Type: TF
Location: 65521 - 66501 (-)
Type: TF
Location: 65521 - 66501 (-)
Gene ID: HRGMv2_1878_7_57
Type: CAZyme
Location: 66577 - 67719 (-)
Type: CAZyme
Location: 66577 - 67719 (-)
Gene ID: HRGMv2_1878_7_58
Type: pfam
Location: 67712 - 68737 (-)
Type: pfam
Location: 67712 - 68737 (-)
Gene ID: HRGMv2_1878_7_59
Type: TC
Location: 68749 - 69990 (-)
Type: TC
Location: 68749 - 69990 (-)
Gene ID: HRGMv2_1878_7_60
Type: pfam
Location: 70267 - 70629 (+)
Type: pfam
Location: 70267 - 70629 (+)
Gene ID: HRGMv2_1878_7_61
Type: TF
Location: 70617 - 70916 (+)
Type: TF
Location: 70617 - 70916 (+)
Gene ID: HRGMv2_1878_7_62
Type: TC
Location: 71058 - 72443 (-)
Type: TC
Location: 71058 - 72443 (-)
Gene ID: HRGMv2_1878_7_63
Type: pfam
Location: 72547 - 74520 (-)
Type: pfam
Location: 72547 - 74520 (-)
Gene ID: HRGMv2_1878_7_64
Type: TC
Location: 74640 - 76826 (-)
Type: TC
Location: 74640 - 76826 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Leclercia
Species
Leclercia adecarboxylata
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1878_7_53 | vegetarian > omnivore | 1.73075 | 0.02798 |
| HRGMv2_1878_7_54 | vegetarian > omnivore | 1.90654 | 0.02798 |
| HRGMv2_1878_7_55 | vegetarian > omnivore | 1.22775 | 0.00257 |
| HRGMv2_1878_7_56 | vegetarian > omnivore | 2.00366 | 0.02798 |
| HRGMv2_1878_7_56 | vegetarian > vegan | 1.09227 | 0.03350 |
| HRGMv2_1878_7_57 | vegetarian > omnivore | 1.54495 | 0.02798 |
| HRGMv2_1878_7_57 | vegetarian > vegan | 1.30863 | 0.03350 |
| HRGMv2_1878_7_59 | vegetarian > omnivore | 1.15608 | 0.02798 |
| HRGMv2_1878_7_59 | vegetarian > vegan | 1.08524 | 0.03350 |
| HRGMv2_1878_7_63 | vegetarian > omnivore | 1.33837 | 0.02798 |
| HRGMv2_1878_7_64 | vegetarian > omnivore | 3.13184 | 0.00822 |