Cluster: HRGMv2_1878_CGC17
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1878
- CGC Family ID: CGCFAM_00788
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1878_6 | HRGMv2_1878_6_64 | 83961 | 84404 | - | GH23 |
| CAZyme | HRGMv2_1878_6 | HRGMv2_1878_6_65 | 84528 | 87221 | - | GH18 |
| TC | HRGMv2_1878_6 | HRGMv2_1878_6_66 | 87469 | 88266 | - | 3.A.15.2.1 |
| pfam | HRGMv2_1878_6 | HRGMv2_1878_6_67 | 88263 | 88748 | - | T2SSM |
| pfam | HRGMv2_1878_6 | HRGMv2_1878_6_68 | 88745 | 89890 | - | T2SSL | GspL_C |
| TC | HRGMv2_1878_6 | HRGMv2_1878_6_69 | 89906 | 90922 | - | 3.A.15.1.1 |
| TC | HRGMv2_1878_6 | HRGMv2_1878_6_70 | 90919 | 91581 | - | 3.A.15.3.1 |
| pfam | HRGMv2_1878_6 | HRGMv2_1878_6_71 | 91578 | 91928 | - | T2SSI |
| TC | HRGMv2_1878_6 | HRGMv2_1878_6_72 | 91945 | 92430 | - | 3.A.15.1.1 |
| TC | HRGMv2_1878_6 | HRGMv2_1878_6_73 | 92430 | 92873 | - | 3.A.15.1.1 |
| TC | HRGMv2_1878_6 | HRGMv2_1878_6_74 | 92876 | 94084 | - | 3.A.15.1.1 |
| TC | HRGMv2_1878_6 | HRGMv2_1878_6_75 | 94084 | 95562 | - | 3.A.15.1.1 |
| TC | HRGMv2_1878_6 | HRGMv2_1878_6_76 | 95577 | 97484 | - | 1.B.22.1.1 |
Gene ID: HRGMv2_1878_6_64
Type: CAZyme
Location: 83961 - 84404 (-)
Type: CAZyme
Location: 83961 - 84404 (-)
Gene ID: HRGMv2_1878_6_65
Type: CAZyme
Location: 84528 - 87221 (-)
Type: CAZyme
Location: 84528 - 87221 (-)
Gene ID: HRGMv2_1878_6_66
Type: TC
Location: 87469 - 88266 (-)
Type: TC
Location: 87469 - 88266 (-)
Gene ID: HRGMv2_1878_6_67
Type: pfam
Location: 88263 - 88748 (-)
Type: pfam
Location: 88263 - 88748 (-)
Gene ID: HRGMv2_1878_6_68
Type: pfam
Location: 88745 - 89890 (-)
Type: pfam
Location: 88745 - 89890 (-)
Gene ID: HRGMv2_1878_6_69
Type: TC
Location: 89906 - 90922 (-)
Type: TC
Location: 89906 - 90922 (-)
Gene ID: HRGMv2_1878_6_70
Type: TC
Location: 90919 - 91581 (-)
Type: TC
Location: 90919 - 91581 (-)
Gene ID: HRGMv2_1878_6_71
Type: pfam
Location: 91578 - 91928 (-)
Type: pfam
Location: 91578 - 91928 (-)
Gene ID: HRGMv2_1878_6_72
Type: TC
Location: 91945 - 92430 (-)
Type: TC
Location: 91945 - 92430 (-)
Gene ID: HRGMv2_1878_6_73
Type: TC
Location: 92430 - 92873 (-)
Type: TC
Location: 92430 - 92873 (-)
Gene ID: HRGMv2_1878_6_74
Type: TC
Location: 92876 - 94084 (-)
Type: TC
Location: 92876 - 94084 (-)
Gene ID: HRGMv2_1878_6_75
Type: TC
Location: 94084 - 95562 (-)
Type: TC
Location: 94084 - 95562 (-)
Gene ID: HRGMv2_1878_6_76
Type: TC
Location: 95577 - 97484 (-)
Type: TC
Location: 95577 - 97484 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Leclercia
Species
Leclercia adecarboxylata
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1878_6_71 | vegetarian > omnivore | 3.04337 | 0.02798 |
| HRGMv2_1878_6_71 | vegetarian > vegan | 1.06756 | 0.03350 |
| HRGMv2_1878_6_72 | vegetarian > omnivore | 3.71629 | 0.02798 |
| HRGMv2_1878_6_72 | vegetarian > vegan | 1.32915 | 0.03350 |
| HRGMv2_1878_6_74 | vegetarian > omnivore | 1.56333 | 0.02798 |