Cluster: HRGMv2_1878_CGC12
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1878
- CGC Family ID: CGCFAM_02022
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1878_4 | HRGMv2_1878_4_162 | 167362 | 168105 | - | 9.B.158.1.2 |
| pfam | HRGMv2_1878_4 | HRGMv2_1878_4_163 | 168191 | 168751 | - | YecM |
| pfam | HRGMv2_1878_4 | HRGMv2_1878_4_164 | 168927 | 170660 | + | tRNA-synt_1d | Arg_tRNA_synt_N | DALR_1 |
| CAZyme | HRGMv2_1878_4 | HRGMv2_1878_4_165 | 170749 | 171888 | - | GH105 |
| TC | HRGMv2_1878_4 | HRGMv2_1878_4_166 | 171893 | 173476 | - | 2.A.2.5.2 |
| pfam | HRGMv2_1878_4 | HRGMv2_1878_4_167 | 173737 | 174129 | - | FlhE |
| TC | HRGMv2_1878_4 | HRGMv2_1878_4_168 | 174129 | 176207 | - | 1.A.104.1.1 |
| TC | HRGMv2_1878_4 | HRGMv2_1878_4_169 | 176200 | 177357 | - | 3.A.6.2.1 |
Gene ID: HRGMv2_1878_4_162
Type: TC
Location: 167362 - 168105 (-)
Type: TC
Location: 167362 - 168105 (-)
Gene ID: HRGMv2_1878_4_163
Type: pfam
Location: 168191 - 168751 (-)
Type: pfam
Location: 168191 - 168751 (-)
Gene ID: HRGMv2_1878_4_164
Type: pfam
Location: 168927 - 170660 (+)
Type: pfam
Location: 168927 - 170660 (+)
Gene ID: HRGMv2_1878_4_165
Type: CAZyme
Location: 170749 - 171888 (-)
Type: CAZyme
Location: 170749 - 171888 (-)
Gene ID: HRGMv2_1878_4_166
Type: TC
Location: 171893 - 173476 (-)
Type: TC
Location: 171893 - 173476 (-)
Gene ID: HRGMv2_1878_4_167
Type: pfam
Location: 173737 - 174129 (-)
Type: pfam
Location: 173737 - 174129 (-)
Gene ID: HRGMv2_1878_4_168
Type: TC
Location: 174129 - 176207 (-)
Type: TC
Location: 174129 - 176207 (-)
Gene ID: HRGMv2_1878_4_169
Type: TC
Location: 176200 - 177357 (-)
Type: TC
Location: 176200 - 177357 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Leclercia
Species
Leclercia adecarboxylata
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1878_4_165 | vegetarian > omnivore | 1.45046 | 0.02798 |
| HRGMv2_1878_4_165 | vegetarian > vegan | 1.26849 | 0.03350 |
| HRGMv2_1878_4_166 | vegetarian > omnivore | 2.06098 | 0.02412 |
| HRGMv2_1878_4_166 | vegetarian > vegan | 1.49203 | 0.03350 |
| HRGMv2_1878_4_169 | vegetarian > vegan | 1.22556 | 0.03350 |