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Cluster: HRGMv2_1843_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1843_12 HRGMv2_1843_12_27 25929 26942 + 3.A.1.11.5
TC HRGMv2_1843_12 HRGMv2_1843_12_28 26949 28061 + 3.A.1.11.5
TC HRGMv2_1843_12 HRGMv2_1843_12_29 28061 28930 + 3.A.1.11.5
TC HRGMv2_1843_12 HRGMv2_1843_12_30 28924 29721 + 3.A.1.11.5
pfam HRGMv2_1843_12 HRGMv2_1843_12_31 29789 30244 - Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10
pfam HRGMv2_1843_12 HRGMv2_1843_12_32 30745 32253 - Glucos_trans_II
CAZyme HRGMv2_1843_12 HRGMv2_1843_12_33 32250 33176 - GT2
pfam HRGMv2_1843_12 HRGMv2_1843_12_34 33173 33529 - GtrA_DPMS_TM
NULL(UNKNOWN) HRGMv2_1843_12 HRGMv2_1843_12_35 33785 34675 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1843_12 HRGMv2_1843_12_36 34870 37059 - GH2
Gene ID: HRGMv2_1843_12_27
Type: TC
Location: 25929 - 26942 (+)
Gene ID: HRGMv2_1843_12_28
Type: TC
Location: 26949 - 28061 (+)
Gene ID: HRGMv2_1843_12_29
Type: TC
Location: 28061 - 28930 (+)
Gene ID: HRGMv2_1843_12_30
Type: TC
Location: 28924 - 29721 (+)
Gene ID: HRGMv2_1843_12_31
Type: pfam
Location: 29789 - 30244 (-)
Gene ID: HRGMv2_1843_12_32
Type: pfam
Location: 30745 - 32253 (-)
Gene ID: HRGMv2_1843_12_33
Type: CAZyme
Location: 32250 - 33176 (-)
Gene ID: HRGMv2_1843_12_34
Type: pfam
Location: 33173 - 33529 (-)
Gene ID: HRGMv2_1843_12_35
Type:
Location: 33785 - 34675 (+)
Gene ID: HRGMv2_1843_12_36
Type: CAZyme
Location: 34870 - 37059 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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