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Cluster: HRGMv2_1843_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1843_28 HRGMv2_1843_28_5 4900 6054 - CE9
pfam HRGMv2_1843_28 HRGMv2_1843_28_6 6078 6878 - Glucosamine_iso
TC HRGMv2_1843_28 HRGMv2_1843_28_7 7214 9241 + 4.A.1.1.2
pfam HRGMv2_1843_28 HRGMv2_1843_28_8 9484 11151 + tRNA-synt_1c | tRNA-synt_1c_C | tRNA-synt_1c_C2
TC HRGMv2_1843_28 HRGMv2_1843_28_9 11679 13076 + 1.B.25.1.13
pfam HRGMv2_1843_28 HRGMv2_1843_28_10 13134 13466 + YbfN
CAZyme HRGMv2_1843_28 HRGMv2_1843_28_11 13483 16152 + GH20
Gene ID: HRGMv2_1843_28_5
Type: CAZyme
Location: 4900 - 6054 (-)
Gene ID: HRGMv2_1843_28_6
Type: pfam
Location: 6078 - 6878 (-)
Gene ID: HRGMv2_1843_28_7
Type: TC
Location: 7214 - 9241 (+)
Gene ID: HRGMv2_1843_28_8
Type: pfam
Location: 9484 - 11151 (+)
Gene ID: HRGMv2_1843_28_9
Type: TC
Location: 11679 - 13076 (+)
Gene ID: HRGMv2_1843_28_10
Type: pfam
Location: 13134 - 13466 (+)
Gene ID: HRGMv2_1843_28_11
Type: CAZyme
Location: 13483 - 16152 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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