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Cluster: HRGMv2_1843_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1843_26 HRGMv2_1843_26_162 177361 177696 - 2.A.7.22.1
CAZyme HRGMv2_1843_26 HRGMv2_1843_26_163 177693 179351 - GT83
pfam HRGMv2_1843_26 HRGMv2_1843_26_164 179348 180247 - Polysacc_deac_1
pfam HRGMv2_1843_26 HRGMv2_1843_26_165 180244 182223 - Formyl_trans_N | Epimerase | Formyl_trans_C | GDP_Man_Dehyd
CAZyme HRGMv2_1843_26 HRGMv2_1843_26_166 182226 183206 - GT2
STP HRGMv2_1843_26 HRGMv2_1843_26_167 183222 184367 - Aminotran_1_2
TC HRGMv2_1843_26 HRGMv2_1843_26_168 187480 188769 + 2.A.1.4.4
TC HRGMv2_1843_26 HRGMv2_1843_26_169 188939 189580 + 2.A.76.1.3
TC HRGMv2_1843_26 HRGMv2_1843_26_170 190145 190807 + 1.A.14.2.1
Gene ID: HRGMv2_1843_26_162
Type: TC
Location: 177361 - 177696 (-)
Gene ID: HRGMv2_1843_26_163
Type: CAZyme
Location: 177693 - 179351 (-)
Gene ID: HRGMv2_1843_26_164
Type: pfam
Location: 179348 - 180247 (-)
Gene ID: HRGMv2_1843_26_165
Type: pfam
Location: 180244 - 182223 (-)
Gene ID: HRGMv2_1843_26_166
Type: CAZyme
Location: 182226 - 183206 (-)
Gene ID: HRGMv2_1843_26_167
Type: STP
Location: 183222 - 184367 (-)
Gene ID: HRGMv2_1843_26_168
Type: TC
Location: 187480 - 188769 (+)
Gene ID: HRGMv2_1843_26_169
Type: TC
Location: 188939 - 189580 (+)
Gene ID: HRGMv2_1843_26_170
Type: TC
Location: 190145 - 190807 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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