Cluster: HRGMv2_1843_CGC24
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1843
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1843_23 | HRGMv2_1843_23_176 | 178892 | 180172 | - | 2.A.23.1.7 |
| STP | HRGMv2_1843_23 | HRGMv2_1843_23_177 | 180392 | 182401 | - | EAL | GGDEF |
| TC | HRGMv2_1843_23 | HRGMv2_1843_23_178 | 182652 | 186161 | - | 1.B.55.3.1 |
| CAZyme | HRGMv2_1843_23 | HRGMv2_1843_23_179 | 186143 | 187267 | - | GH8 |
| TC | HRGMv2_1843_23 | HRGMv2_1843_23_180 | 187272 | 189623 | - | 4.D.3.1.6 |
| CAZyme | HRGMv2_1843_23 | HRGMv2_1843_23_181 | 189681 | 192251 | - | GT2 |
Gene ID: HRGMv2_1843_23_176
Type: TC
Location: 178892 - 180172 (-)
Type: TC
Location: 178892 - 180172 (-)
Gene ID: HRGMv2_1843_23_177
Type: STP
Location: 180392 - 182401 (-)
Type: STP
Location: 180392 - 182401 (-)
Gene ID: HRGMv2_1843_23_178
Type: TC
Location: 182652 - 186161 (-)
Type: TC
Location: 182652 - 186161 (-)
Gene ID: HRGMv2_1843_23_179
Type: CAZyme
Location: 186143 - 187267 (-)
Type: CAZyme
Location: 186143 - 187267 (-)
Gene ID: HRGMv2_1843_23_180
Type: TC
Location: 187272 - 189623 (-)
Type: TC
Location: 187272 - 189623 (-)
Gene ID: HRGMv2_1843_23_181
Type: CAZyme
Location: 189681 - 192251 (-)
Type: CAZyme
Location: 189681 - 192251 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Edwardsiella
Species
Edwardsiella tarda
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.