Cluster: HRGMv2_1843_CGC23
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_1843
- CGC Family ID: CGCFAM_00123
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1843_23 | HRGMv2_1843_23_102 | 87429 | 88043 | + | 2.A.76.1.4 |
| TF | HRGMv2_1843_23 | HRGMv2_1843_23_103 | 88051 | 90765 | - | GerE |
| CAZyme | HRGMv2_1843_23 | HRGMv2_1843_23_104 | 91231 | 93636 | + | GT35 |
| CAZyme | HRGMv2_1843_23 | HRGMv2_1843_23_105 | 93646 | 95739 | + | GH77 |
| pfam | HRGMv2_1843_23 | HRGMv2_1843_23_106 | 96214 | 97530 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_1843_23 | HRGMv2_1843_23_107 | 97759 | 99969 | + | CBM48 | GH13_9 |
| CAZyme | HRGMv2_1843_23 | HRGMv2_1843_23_108 | 99953 | 101932 | + | GH13_11 |
| pfam | HRGMv2_1843_23 | HRGMv2_1843_23_109 | 101987 | 103267 | + | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | HRGMv2_1843_23 | HRGMv2_1843_23_110 | 103308 | 104738 | + | GT5 |
| CAZyme | HRGMv2_1843_23 | HRGMv2_1843_23_111 | 104892 | 107342 | + | GT35 |
| pfam | HRGMv2_1843_23 | HRGMv2_1843_23_112 | 107396 | 108883 | - | DAO | DAO_C |
| TF | HRGMv2_1843_23 | HRGMv2_1843_23_113 | 109269 | 110027 | - | HTH_DeoR |
| TC | HRGMv2_1843_23 | HRGMv2_1843_23_114 | 110090 | 110920 | - | 9.B.104.1.1 |
Gene ID: HRGMv2_1843_23_102
Type: TC
Location: 87429 - 88043 (+)
Type: TC
Location: 87429 - 88043 (+)
Gene ID: HRGMv2_1843_23_103
Type: TF
Location: 88051 - 90765 (-)
Type: TF
Location: 88051 - 90765 (-)
Gene ID: HRGMv2_1843_23_104
Type: CAZyme
Location: 91231 - 93636 (+)
Type: CAZyme
Location: 91231 - 93636 (+)
Gene ID: HRGMv2_1843_23_105
Type: CAZyme
Location: 93646 - 95739 (+)
Type: CAZyme
Location: 93646 - 95739 (+)
Gene ID: HRGMv2_1843_23_106
Type: pfam
Location: 96214 - 97530 (+)
Type: pfam
Location: 96214 - 97530 (+)
Gene ID: HRGMv2_1843_23_107
Type: CAZyme
Location: 97759 - 99969 (+)
Type: CAZyme
Location: 97759 - 99969 (+)
Gene ID: HRGMv2_1843_23_108
Type: CAZyme
Location: 99953 - 101932 (+)
Type: CAZyme
Location: 99953 - 101932 (+)
Gene ID: HRGMv2_1843_23_109
Type: pfam
Location: 101987 - 103267 (+)
Type: pfam
Location: 101987 - 103267 (+)
Gene ID: HRGMv2_1843_23_110
Type: CAZyme
Location: 103308 - 104738 (+)
Type: CAZyme
Location: 103308 - 104738 (+)
Gene ID: HRGMv2_1843_23_111
Type: CAZyme
Location: 104892 - 107342 (+)
Type: CAZyme
Location: 104892 - 107342 (+)
Gene ID: HRGMv2_1843_23_112
Type: pfam
Location: 107396 - 108883 (-)
Type: pfam
Location: 107396 - 108883 (-)
Gene ID: HRGMv2_1843_23_113
Type: TF
Location: 109269 - 110027 (-)
Type: TF
Location: 109269 - 110027 (-)
Gene ID: HRGMv2_1843_23_114
Type: TC
Location: 110090 - 110920 (-)
Type: TC
Location: 110090 - 110920 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Edwardsiella
Species
Edwardsiella tarda
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.