Cluster: HRGMv2_1843_CGC21
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1843
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1843_22 | HRGMv2_1843_22_45 | 44200 | 45990 | - | GH13_21 |
| TC | HRGMv2_1843_22 | HRGMv2_1843_22_46 | 46241 | 47518 | + | 1.A.23.4.5 |
| NULL(UNKNOWN) | HRGMv2_1843_22 | HRGMv2_1843_22_47 | 47650 | 47916 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1843_22 | HRGMv2_1843_22_48 | 47990 | 49381 | - | 2.A.3.1.23 |
| TC | HRGMv2_1843_22 | HRGMv2_1843_22_49 | 49525 | 50913 | - | 2.A.26.1.10 |
| STP | HRGMv2_1843_22 | HRGMv2_1843_22_50 | 51517 | 53751 | - | EAL | MASE1 |
| TC | HRGMv2_1843_22 | HRGMv2_1843_22_51 | 53995 | 54243 | + | 9.B.209.1.2 |
Gene ID: HRGMv2_1843_22_45
Type: CAZyme
Location: 44200 - 45990 (-)
Type: CAZyme
Location: 44200 - 45990 (-)
Gene ID: HRGMv2_1843_22_46
Type: TC
Location: 46241 - 47518 (+)
Type: TC
Location: 46241 - 47518 (+)
Gene ID: HRGMv2_1843_22_47
Type:
Location: 47650 - 47916 (+)
Type:
Location: 47650 - 47916 (+)
Gene ID: HRGMv2_1843_22_48
Type: TC
Location: 47990 - 49381 (-)
Type: TC
Location: 47990 - 49381 (-)
Gene ID: HRGMv2_1843_22_49
Type: TC
Location: 49525 - 50913 (-)
Type: TC
Location: 49525 - 50913 (-)
Gene ID: HRGMv2_1843_22_50
Type: STP
Location: 51517 - 53751 (-)
Type: STP
Location: 51517 - 53751 (-)
Gene ID: HRGMv2_1843_22_51
Type: TC
Location: 53995 - 54243 (+)
Type: TC
Location: 53995 - 54243 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Edwardsiella
Species
Edwardsiella tarda
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.