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Cluster: HRGMv2_1843_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1843_2 HRGMv2_1843_2_227 251635 252723 - GH103
NULL(UNKNOWN) HRGMv2_1843_2 HRGMv2_1843_2_228 253203 253394 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1843_2 HRGMv2_1843_2_229 253721 255835 + 2.A.114.1.1
pfam HRGMv2_1843_2 HRGMv2_1843_2_230 255881 256078 + Sel_put
TC HRGMv2_1843_2 HRGMv2_1843_2_231 256168 257211 + 9.B.10.1.1
NULL(UNKNOWN) HRGMv2_1843_2 HRGMv2_1843_2_232 257407 257646 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_1843_2 HRGMv2_1843_2_233 258250 258459 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1843_2 HRGMv2_1843_2_234 258664 259305 + 2.A.76.1.5
TF HRGMv2_1843_2 HRGMv2_1843_2_235 259506 259889 + HTH_AraC | HTH_AraC
peptidase HRGMv2_1843_2 HRGMv2_1843_2_236 259925 260428 - I11.001
TC HRGMv2_1843_2 HRGMv2_1843_2_237 260585 262180 - 3.A.1.121.4
NULL(UNKNOWN) HRGMv2_1843_2 HRGMv2_1843_2_238 262832 262975 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_1843_2 HRGMv2_1843_2_239 262966 263868 + HTH_1
TC HRGMv2_1843_2 HRGMv2_1843_2_240 264065 265729 + 1.B.52.2.1
Gene ID: HRGMv2_1843_2_227
Type: CAZyme
Location: 251635 - 252723 (-)
Gene ID: HRGMv2_1843_2_228
Type:
Location: 253203 - 253394 (+)
Gene ID: HRGMv2_1843_2_229
Type: TC
Location: 253721 - 255835 (+)
Gene ID: HRGMv2_1843_2_230
Type: pfam
Location: 255881 - 256078 (+)
Gene ID: HRGMv2_1843_2_231
Type: TC
Location: 256168 - 257211 (+)
Gene ID: HRGMv2_1843_2_232
Type:
Location: 257407 - 257646 (-)
Gene ID: HRGMv2_1843_2_233
Type:
Location: 258250 - 258459 (+)
Gene ID: HRGMv2_1843_2_234
Type: TC
Location: 258664 - 259305 (+)
Gene ID: HRGMv2_1843_2_235
Type: TF
Location: 259506 - 259889 (+)
Gene ID: HRGMv2_1843_2_236
Type: peptidase
Location: 259925 - 260428 (-)
Gene ID: HRGMv2_1843_2_237
Type: TC
Location: 260585 - 262180 (-)
Gene ID: HRGMv2_1843_2_238
Type:
Location: 262832 - 262975 (+)
Gene ID: HRGMv2_1843_2_239
Type: TF
Location: 262966 - 263868 (+)
Gene ID: HRGMv2_1843_2_240
Type: TC
Location: 264065 - 265729 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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