Cluster: HRGMv2_1843_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1843
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1843_12 | HRGMv2_1843_12_40 | 41396 | 43234 | - | GT2 |
| pfam | HRGMv2_1843_12 | HRGMv2_1843_12_41 | 43454 | 44677 | + | Acyl_transf_3 | OpgC_C |
| pfam | HRGMv2_1843_12 | HRGMv2_1843_12_42 | 44828 | 45625 | + | SBP_bac_11 |
| TC | HRGMv2_1843_12 | HRGMv2_1843_12_43 | 45498 | 46301 | - | 3.A.1.14.11 |
| TC | HRGMv2_1843_12 | HRGMv2_1843_12_44 | 46286 | 47305 | - | 3.A.1.14.11 |
| TC | HRGMv2_1843_12 | HRGMv2_1843_12_45 | 47295 | 48347 | - | 3.A.1.14.11 |
Gene ID: HRGMv2_1843_12_40
Type: CAZyme
Location: 41396 - 43234 (-)
Type: CAZyme
Location: 41396 - 43234 (-)
Gene ID: HRGMv2_1843_12_41
Type: pfam
Location: 43454 - 44677 (+)
Type: pfam
Location: 43454 - 44677 (+)
Gene ID: HRGMv2_1843_12_42
Type: pfam
Location: 44828 - 45625 (+)
Type: pfam
Location: 44828 - 45625 (+)
Gene ID: HRGMv2_1843_12_43
Type: TC
Location: 45498 - 46301 (-)
Type: TC
Location: 45498 - 46301 (-)
Gene ID: HRGMv2_1843_12_44
Type: TC
Location: 46286 - 47305 (-)
Type: TC
Location: 46286 - 47305 (-)
Gene ID: HRGMv2_1843_12_45
Type: TC
Location: 47295 - 48347 (-)
Type: TC
Location: 47295 - 48347 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Edwardsiella
Species
Edwardsiella tarda
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.