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Cluster: HRGMv2_1832_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1832_13 HRGMv2_1832_13_1 93 1394 - 2.A.56.1.5
TC HRGMv2_1832_13 HRGMv2_1832_13_2 1396 1914 - 2.A.56.1.5
TC HRGMv2_1832_13 HRGMv2_1832_13_3 2021 3019 - 2.A.56.1.5
CAZyme HRGMv2_1832_13 HRGMv2_1832_13_4 3457 4914 + GT5
TF HRGMv2_1832_13 HRGMv2_1832_13_5 5001 5933 - HTH_6
CAZyme HRGMv2_1832_13 HRGMv2_1832_13_6 5933 7096 - CE9
TC HRGMv2_1832_13 HRGMv2_1832_13_7 7125 8513 - 3.A.18.1.1
pfam HRGMv2_1832_13 HRGMv2_1832_13_8 8510 8770 - Sdh5
sulfatase HRGMv2_1832_13 HRGMv2_1832_13_9 8780 9574 - S1_63
TC HRGMv2_1832_13 HRGMv2_1832_13_10 9619 11907 - 8.A.7.1.5
Gene ID: HRGMv2_1832_13_1
Type: TC
Location: 93 - 1394 (-)
Gene ID: HRGMv2_1832_13_2
Type: TC
Location: 1396 - 1914 (-)
Gene ID: HRGMv2_1832_13_3
Type: TC
Location: 2021 - 3019 (-)
Gene ID: HRGMv2_1832_13_4
Type: CAZyme
Location: 3457 - 4914 (+)
Gene ID: HRGMv2_1832_13_5
Type: TF
Location: 5001 - 5933 (-)
Gene ID: HRGMv2_1832_13_6
Type: CAZyme
Location: 5933 - 7096 (-)
Gene ID: HRGMv2_1832_13_7
Type: TC
Location: 7125 - 8513 (-)
Gene ID: HRGMv2_1832_13_8
Type: pfam
Location: 8510 - 8770 (-)
Gene ID: HRGMv2_1832_13_9
Type: sulfatase
Location: 8780 - 9574 (-)
Gene ID: HRGMv2_1832_13_10
Type: TC
Location: 9619 - 11907 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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