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Cluster: HRGMv2_1832_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1832_6 HRGMv2_1832_6_27 30108 31484 + 2.A.22.5.3
TC HRGMv2_1832_6 HRGMv2_1832_6_28 31489 32868 + 2.A.22.5.3
TC HRGMv2_1832_6 HRGMv2_1832_6_29 32947 34320 + 2.A.22.5.3
CAZyme HRGMv2_1832_6 HRGMv2_1832_6_30 34413 36404 + GH23
CAZyme HRGMv2_1832_6 HRGMv2_1832_6_31 36688 37764 + GH177
NULL(UNKNOWN) HRGMv2_1832_6 HRGMv2_1832_6_32 37786 37938 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1832_6 HRGMv2_1832_6_33 38163 39467 - 2.A.56.1.8
pfam HRGMv2_1832_6 HRGMv2_1832_6_34 39460 39969 - DctQ
TC HRGMv2_1832_6 HRGMv2_1832_6_35 40035 41039 - 2.A.56.1.8
Gene ID: HRGMv2_1832_6_27
Type: TC
Location: 30108 - 31484 (+)
Gene ID: HRGMv2_1832_6_28
Type: TC
Location: 31489 - 32868 (+)
Gene ID: HRGMv2_1832_6_29
Type: TC
Location: 32947 - 34320 (+)
Gene ID: HRGMv2_1832_6_30
Type: CAZyme
Location: 34413 - 36404 (+)
Gene ID: HRGMv2_1832_6_31
Type: CAZyme
Location: 36688 - 37764 (+)
Gene ID: HRGMv2_1832_6_32
Type:
Location: 37786 - 37938 (-)
Gene ID: HRGMv2_1832_6_33
Type: TC
Location: 38163 - 39467 (-)
Gene ID: HRGMv2_1832_6_34
Type: pfam
Location: 39460 - 39969 (-)
Gene ID: HRGMv2_1832_6_35
Type: TC
Location: 40035 - 41039 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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