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Cluster: HRGMv2_1832_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1832_63 HRGMv2_1832_63_1 360 1706 - GH1
TC HRGMv2_1832_63 HRGMv2_1832_63_2 1993 2874 + 3.A.1.1.11
TC HRGMv2_1832_63 HRGMv2_1832_63_3 2867 3802 + 3.A.1.1.47
pfam HRGMv2_1832_63 HRGMv2_1832_63_4 3813 4463 + DUF624
pfam HRGMv2_1832_63 HRGMv2_1832_63_5 4456 5667 + GlcNAc_2-epim
TC HRGMv2_1832_63 HRGMv2_1832_63_6 5683 6768 + 3.A.1.1.22
TC HRGMv2_1832_63 HRGMv2_1832_63_7 7154 8374 + 2.A.6.2.19
TC HRGMv2_1832_63 HRGMv2_1832_63_8 8371 11574 + 2.A.6.2.19
Gene ID: HRGMv2_1832_63_1
Type: CAZyme
Location: 360 - 1706 (-)
Gene ID: HRGMv2_1832_63_2
Type: TC
Location: 1993 - 2874 (+)
Gene ID: HRGMv2_1832_63_3
Type: TC
Location: 2867 - 3802 (+)
Gene ID: HRGMv2_1832_63_4
Type: pfam
Location: 3813 - 4463 (+)
Gene ID: HRGMv2_1832_63_5
Type: pfam
Location: 4456 - 5667 (+)
Gene ID: HRGMv2_1832_63_6
Type: TC
Location: 5683 - 6768 (+)
Gene ID: HRGMv2_1832_63_7
Type: TC
Location: 7154 - 8374 (+)
Gene ID: HRGMv2_1832_63_8
Type: TC
Location: 8371 - 11574 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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