Cluster: HRGMv2_1832_CGC10
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1832
- CGC Family ID: CGCFAM_02883
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1832_33 | HRGMv2_1832_33_1 | 109 | 1971 | - | 4.A.2.1.7 |
| pfam | HRGMv2_1832_33 | HRGMv2_1832_33_2 | 2026 | 2658 | - | Hexapep | SATase_N |
| pfam | HRGMv2_1832_33 | HRGMv2_1832_33_3 | 2701 | 2859 | - | SATase_N |
| TC | HRGMv2_1832_33 | HRGMv2_1832_33_4 | 2856 | 3833 | - | 2.A.4.7.5 |
| pfam | HRGMv2_1832_33 | HRGMv2_1832_33_5 | 4147 | 6591 | + | Acyltransferase | GPAT_C |
| pfam | HRGMv2_1832_33 | HRGMv2_1832_33_6 | 6607 | 7086 | + | FliL |
| TC | HRGMv2_1832_33 | HRGMv2_1832_33_7 | 7153 | 8007 | - | 9.B.104.1.1 |
| pfam | HRGMv2_1832_33 | HRGMv2_1832_33_8 | 7986 | 8951 | - | 3Beta_HSD | Epimerase | GDP_Man_Dehyd |
| CAZyme | HRGMv2_1832_33 | HRGMv2_1832_33_9 | 9110 | 10141 | + | GT9 |
| CAZyme | HRGMv2_1832_33 | HRGMv2_1832_33_10 | 10138 | 11445 | + | GT30 |
| STP | HRGMv2_1832_33 | HRGMv2_1832_33_11 | 11771 | 12496 | + | HTH_IclR | IclR |
| TC | HRGMv2_1832_33 | HRGMv2_1832_33_12 | 12547 | 13107 | - | 2.A.37.1.2 |
| pfam | HRGMv2_1832_33 | HRGMv2_1832_33_13 | 13235 | 13954 | - | RIO1 | Kdo |
| CAZyme | HRGMv2_1832_33 | HRGMv2_1832_33_14 | 13990 | 15120 | + | GT9 |
Gene ID: HRGMv2_1832_33_1
Type: TC
Location: 109 - 1971 (-)
Type: TC
Location: 109 - 1971 (-)
Gene ID: HRGMv2_1832_33_2
Type: pfam
Location: 2026 - 2658 (-)
Type: pfam
Location: 2026 - 2658 (-)
Gene ID: HRGMv2_1832_33_3
Type: pfam
Location: 2701 - 2859 (-)
Type: pfam
Location: 2701 - 2859 (-)
Gene ID: HRGMv2_1832_33_4
Type: TC
Location: 2856 - 3833 (-)
Type: TC
Location: 2856 - 3833 (-)
Gene ID: HRGMv2_1832_33_5
Type: pfam
Location: 4147 - 6591 (+)
Type: pfam
Location: 4147 - 6591 (+)
Gene ID: HRGMv2_1832_33_6
Type: pfam
Location: 6607 - 7086 (+)
Type: pfam
Location: 6607 - 7086 (+)
Gene ID: HRGMv2_1832_33_7
Type: TC
Location: 7153 - 8007 (-)
Type: TC
Location: 7153 - 8007 (-)
Gene ID: HRGMv2_1832_33_8
Type: pfam
Location: 7986 - 8951 (-)
Type: pfam
Location: 7986 - 8951 (-)
Gene ID: HRGMv2_1832_33_9
Type: CAZyme
Location: 9110 - 10141 (+)
Type: CAZyme
Location: 9110 - 10141 (+)
Gene ID: HRGMv2_1832_33_10
Type: CAZyme
Location: 10138 - 11445 (+)
Type: CAZyme
Location: 10138 - 11445 (+)
Gene ID: HRGMv2_1832_33_11
Type: STP
Location: 11771 - 12496 (+)
Type: STP
Location: 11771 - 12496 (+)
Gene ID: HRGMv2_1832_33_12
Type: TC
Location: 12547 - 13107 (-)
Type: TC
Location: 12547 - 13107 (-)
Gene ID: HRGMv2_1832_33_13
Type: pfam
Location: 13235 - 13954 (-)
Type: pfam
Location: 13235 - 13954 (-)
Gene ID: HRGMv2_1832_33_14
Type: CAZyme
Location: 13990 - 15120 (+)
Type: CAZyme
Location: 13990 - 15120 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.