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Cluster: HRGMv2_1826_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1826_7 HRGMv2_1826_7_14 28475 30604 - GH23
TC HRGMv2_1826_7 HRGMv2_1826_7_15 31284 32660 - 2.A.22.5.3
TC HRGMv2_1826_7 HRGMv2_1826_7_16 33086 34456 - 2.A.22.5.3
TC HRGMv2_1826_7 HRGMv2_1826_7_17 34788 36170 - 2.A.22.5.3
pfam HRGMv2_1826_7 HRGMv2_1826_7_18 37018 39177 - KH_1 | S1 | RNase_PH | RNase_PH | RNase_PH_C | RNase_PH_C | PNPase
TC HRGMv2_1826_7 HRGMv2_1826_7_19 40501 41010 + 2.A.1.1.106
pfam HRGMv2_1826_7 HRGMv2_1826_7_20 41267 41536 - Ribosomal_S15
TC HRGMv2_1826_7 HRGMv2_1826_7_21 41979 43811 - 1.B.52.2.1
pfam HRGMv2_1826_7 HRGMv2_1826_7_22 44977 45456 + SmpB
TC HRGMv2_1826_7 HRGMv2_1826_7_23 45671 46615 - 2.A.6.4.1
TC HRGMv2_1826_7 HRGMv2_1826_7_24 46631 48511 - 2.A.6.4.1
TC HRGMv2_1826_7 HRGMv2_1826_7_25 49201 49536 - 3.A.5.1.1
pfam HRGMv2_1826_7 HRGMv2_1826_7_26 50231 51352 - TGT
pfam HRGMv2_1826_7 HRGMv2_1826_7_27 51378 52517 - Queuosine_synth
TC HRGMv2_1826_7 HRGMv2_1826_7_28 54043 55581 + 3.D.2.1.1
TC HRGMv2_1826_7 HRGMv2_1826_7_29 55602 57107 + 3.D.2.1.1
Gene ID: HRGMv2_1826_7_14
Type: CAZyme
Location: 28475 - 30604 (-)
Gene ID: HRGMv2_1826_7_15
Type: TC
Location: 31284 - 32660 (-)
Gene ID: HRGMv2_1826_7_16
Type: TC
Location: 33086 - 34456 (-)
Gene ID: HRGMv2_1826_7_17
Type: TC
Location: 34788 - 36170 (-)
Gene ID: HRGMv2_1826_7_18
Type: pfam
Location: 37018 - 39177 (-)
Gene ID: HRGMv2_1826_7_19
Type: TC
Location: 40501 - 41010 (+)
Gene ID: HRGMv2_1826_7_20
Type: pfam
Location: 41267 - 41536 (-)
Gene ID: HRGMv2_1826_7_21
Type: TC
Location: 41979 - 43811 (-)
Gene ID: HRGMv2_1826_7_22
Type: pfam
Location: 44977 - 45456 (+)
Gene ID: HRGMv2_1826_7_23
Type: TC
Location: 45671 - 46615 (-)
Gene ID: HRGMv2_1826_7_24
Type: TC
Location: 46631 - 48511 (-)
Gene ID: HRGMv2_1826_7_25
Type: TC
Location: 49201 - 49536 (-)
Gene ID: HRGMv2_1826_7_26
Type: pfam
Location: 50231 - 51352 (-)
Gene ID: HRGMv2_1826_7_27
Type: pfam
Location: 51378 - 52517 (-)
Gene ID: HRGMv2_1826_7_28
Type: TC
Location: 54043 - 55581 (+)
Gene ID: HRGMv2_1826_7_29
Type: TC
Location: 55602 - 57107 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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