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Cluster: HRGMv2_1821_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1821_25 HRGMv2_1821_25_15 18720 20156 + GT20
TF HRGMv2_1821_25 HRGMv2_1821_25_16 21174 21527 + FlhD
TF HRGMv2_1821_25 HRGMv2_1821_25_17 21524 22102 + FlhC
TC HRGMv2_1821_25 HRGMv2_1821_25_18 22236 23123 + 1.A.30.1.1
TC HRGMv2_1821_25 HRGMv2_1821_25_19 23120 24061 + 1.A.30.1.1
STP HRGMv2_1821_25 HRGMv2_1821_25_20 24067 26055 + CheW | CheY-binding | H-kinase_dim | HATPase_c
STP HRGMv2_1821_25 HRGMv2_1821_25_21 26079 26576 + CheW
TC HRGMv2_1821_25 HRGMv2_1821_25_22 26738 28411 + 1.B.52.2.1
TC HRGMv2_1821_25 HRGMv2_1821_25_23 28606 30168 + 1.B.52.2.1
TC HRGMv2_1821_25 HRGMv2_1821_25_24 30275 31951 + 1.B.52.2.1
Gene ID: HRGMv2_1821_25_15
Type: CAZyme
Location: 18720 - 20156 (+)
Gene ID: HRGMv2_1821_25_16
Type: TF
Location: 21174 - 21527 (+)
Gene ID: HRGMv2_1821_25_17
Type: TF
Location: 21524 - 22102 (+)
Gene ID: HRGMv2_1821_25_18
Type: TC
Location: 22236 - 23123 (+)
Gene ID: HRGMv2_1821_25_19
Type: TC
Location: 23120 - 24061 (+)
Gene ID: HRGMv2_1821_25_20
Type: STP
Location: 24067 - 26055 (+)
Gene ID: HRGMv2_1821_25_21
Type: STP
Location: 26079 - 26576 (+)
Gene ID: HRGMv2_1821_25_22
Type: TC
Location: 26738 - 28411 (+)
Gene ID: HRGMv2_1821_25_23
Type: TC
Location: 28606 - 30168 (+)
Gene ID: HRGMv2_1821_25_24
Type: TC
Location: 30275 - 31951 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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