Cluster: HRGMv2_1821_CGC25
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1821
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1821_13 | HRGMv2_1821_13_18 | 15616 | 21822 | + | GH94 | GT84 |
| pfam | HRGMv2_1821_13 | HRGMv2_1821_13_19 | 22048 | 23145 | + | Dala_Dala_lig_N | ATP-grasp | CPSase_L_D2 | Dala_Dala_lig_C |
| TC | HRGMv2_1821_13 | HRGMv2_1821_13_20 | 23166 | 24587 | - | 9.B.34.1.4 |
| TC | HRGMv2_1821_13 | HRGMv2_1821_13_21 | 24856 | 26331 | - | 2.A.53.3.8 |
| TC | HRGMv2_1821_13 | HRGMv2_1821_13_22 | 26328 | 26963 | - | 2.A.53.3.8 |
Gene ID: HRGMv2_1821_13_18
Type: CAZyme
Location: 15616 - 21822 (+)
Type: CAZyme
Location: 15616 - 21822 (+)
Gene ID: HRGMv2_1821_13_19
Type: pfam
Location: 22048 - 23145 (+)
Type: pfam
Location: 22048 - 23145 (+)
Gene ID: HRGMv2_1821_13_20
Type: TC
Location: 23166 - 24587 (-)
Type: TC
Location: 23166 - 24587 (-)
Gene ID: HRGMv2_1821_13_21
Type: TC
Location: 24856 - 26331 (-)
Type: TC
Location: 24856 - 26331 (-)
Gene ID: HRGMv2_1821_13_22
Type: TC
Location: 26328 - 26963 (-)
Type: TC
Location: 26328 - 26963 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea agglomerans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.