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Cluster: HRGMv2_1821_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1821_5 HRGMv2_1821_5_5 3565 5388 + 9.B.22.2.2
TC HRGMv2_1821_5 HRGMv2_1821_5_6 5419 6990 - 2.A.109.2.3
TC HRGMv2_1821_5 HRGMv2_1821_5_7 7787 9220 + 9.B.18.1.2
TC HRGMv2_1821_5 HRGMv2_1821_5_8 9508 10647 + 1.B.18.3.1
pfam HRGMv2_1821_5 HRGMv2_1821_5_9 10657 11091 + LMWPc
TC HRGMv2_1821_5 HRGMv2_1821_5_10 11104 13281 + 8.A.3.3.2
pfam HRGMv2_1821_5 HRGMv2_1821_5_11 13559 14695 + EpsG
CAZyme HRGMv2_1821_5 HRGMv2_1821_5_12 14824 15741 + GT2
CAZyme HRGMv2_1821_5 HRGMv2_1821_5_13 15811 16563 + GT2
CAZyme HRGMv2_1821_5 HRGMv2_1821_5_14 16610 17644 + GT4
pfam HRGMv2_1821_5 HRGMv2_1821_5_15 17727 19943 + Head_binding
pfam HRGMv2_1821_5 HRGMv2_1821_5_16 20103 21365 + PS_pyruv_trans
CAZyme HRGMv2_1821_5 HRGMv2_1821_5_17 21370 22593 + GT4
TC HRGMv2_1821_5 HRGMv2_1821_5_18 22590 23930 + 2.A.66.2.8
Gene ID: HRGMv2_1821_5_5
Type: TC
Location: 3565 - 5388 (+)
Gene ID: HRGMv2_1821_5_6
Type: TC
Location: 5419 - 6990 (-)
Gene ID: HRGMv2_1821_5_7
Type: TC
Location: 7787 - 9220 (+)
Gene ID: HRGMv2_1821_5_8
Type: TC
Location: 9508 - 10647 (+)
Gene ID: HRGMv2_1821_5_9
Type: pfam
Location: 10657 - 11091 (+)
Gene ID: HRGMv2_1821_5_10
Type: TC
Location: 11104 - 13281 (+)
Gene ID: HRGMv2_1821_5_11
Type: pfam
Location: 13559 - 14695 (+)
Gene ID: HRGMv2_1821_5_12
Type: CAZyme
Location: 14824 - 15741 (+)
Gene ID: HRGMv2_1821_5_13
Type: CAZyme
Location: 15811 - 16563 (+)
Gene ID: HRGMv2_1821_5_14
Type: CAZyme
Location: 16610 - 17644 (+)
Gene ID: HRGMv2_1821_5_15
Type: pfam
Location: 17727 - 19943 (+)
Gene ID: HRGMv2_1821_5_16
Type: pfam
Location: 20103 - 21365 (+)
Gene ID: HRGMv2_1821_5_17
Type: CAZyme
Location: 21370 - 22593 (+)
Gene ID: HRGMv2_1821_5_18
Type: TC
Location: 22590 - 23930 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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